Microbacterium liquefaciens: NMQ05_06445
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Entry
NMQ05_06445 CDS
T08516
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mliq
Microbacterium liquefaciens
Pathway
mliq03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mliq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
NMQ05_06445 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mliq03400
]
NMQ05_06445 (ligD)
Enzymes [BR:
mliq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
NMQ05_06445 (ligD)
DNA repair and recombination proteins [BR:
mliq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
NMQ05_06445 (ligD)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
UTT54218
LinkDB
All DBs
Position
complement(1280808..1282760)
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AA seq
650 aa
AA seq
DB search
MVTEGQIVQVDGRRLRVTNLDKVVYPETGTTKGEIIAYYTAIAPLLLPLLDGRPVTRKRW
VEGVGSAEAPADAFFTKQIEPGAPSWIPRQAIQHSDGPKEYPLVQDVPTLVWLMQVAAIE
LHVPQWRFSPEGLPGKPDRLVLDLDPGEGVGLEQCAEVARIARVILSDMGLDPLPVTSGS
KGIHLYASLPGEQTSDEVSTVVRELARMIENDHPDLATSVMAKAVRGGKVFLDWSQNNGK
KTTISPYSLRGRAQPWVAAPRTWDELDDPGLAQLDLDQVLARAAAGVDPLATLHPPETAP
LPQPAKARRSHRYPQSSPATVSPPIPASVAPMLAENGSPGVARALSDPSWVEVKWDGIRA
MGTWANGRMLLHARSGIDITARYPELTADGAPFLPVADAIVDGEIVAFDSHGRPSFSLLQ
NRMHLTRPREIEREVVRTPIVYMLFDLLRLDGHDLTGMPLRERHTLLEDVIADLDAPVQI
PPVFDDVDAALAASREFGLEGVVVKDPMSRYRPGQRSPSWLKLKHTRMQEAVIVGIRPGK
GDRESTLGSLLLAVPDPTRGGSGLRYVGRVGTGFTDRILRDLLTRLEPLRVDAAPLDGVP
APDASDALWVRAEVVGEVEFANWTPDGVLRHARWRGLRPDKSPDEISIEA
NT seq
1953 nt
NT seq
+upstream
nt +downstream
nt
atggtcacagaagggcagatcgtgcaggtcgacggccgacgcctgcgtgtgaccaacctc
gacaaggtcgtgtaccccgagaccggcaccaccaagggcgagatcatcgcctactacacg
gccatcgctccgctcctgctccccctcctcgacggccgccccgtcacccgcaaacgctgg
gtggagggcgtcgggagcgcggaggccccggctgacgcgttcttcacgaagcagatcgaa
ccgggcgcgccgtcgtggatcccccgacaggcgatccagcactcggacggccccaaggag
tatcccctcgtccaggacgttccgaccctcgtctggctcatgcaggtcgccgccatcgaa
ctgcatgtgccgcagtggcgcttctcccccgagggccttcccggcaagcccgatcggctc
gtgctcgacctcgaccccggggagggggtggggctggagcagtgtgccgaggtcgcccgc
atcgcccgcgtcatcctgtccgacatggggctcgaccccctgccggtcaccagcggcagc
aagggcatccacctgtacgcgtcgctacccggcgagcagacgagcgacgaggtctcgacc
gtcgtcagagaacttgcgcggatgatcgagaacgaccaccccgacctcgccaccagcgtc
atggcgaaggcggtccgtggcggcaaggtgttcctcgactggagccagaacaacggcaag
aagaccacgatctcgccctactcgctccgcggccgtgcgcagccctgggtggctgctcct
cgcacctgggacgaactcgacgacccgggcctcgcccagctcgacctcgatcaggtgctc
gcccgcgcggccgccggcgtcgaccccctcgcaacgctccacccgcccgagaccgctccg
ctcccgcaaccggcgaaggcccgacgctcccaccggtatccccagagctctcccgcgacc
gtctcccctccgatcccggcatcggtggcgccgatgctcgccgagaacggctcccccggg
gtcgcccgcgctctgagcgacccctcgtgggtcgaggtcaagtgggacggcatccgcgcg
atgggcacctgggcgaacgggcggatgctgctgcacgcacgcagcggaatcgacatcacc
gcccgctaccccgagctcacagccgacggagcgcccttcctgccggtcgcagacgcgatc
gtcgacggggagatcgtcgccttcgactcccacggccgcccgagcttctccctcctccag
aatcggatgcacctcacccgcccgcgagagatcgagcgcgaggtggtgcgcacgcccatc
gtctacatgctgttcgacctgctgcggctcgacggacacgacctcaccggcatgcctctg
cgggagcgtcacacactgctcgaggatgtgatcgcagacctcgacgcccccgtgcagatc
cctcccgtgttcgacgacgtcgacgcggcactcgctgcaagccgggagttcgggctcgag
ggcgtcgtcgtcaaggatccgatgtcgcggtaccgcccggggcagcgctccccctcctgg
ctgaagctcaagcacaccaggatgcaggaggcggtgatcgtcgggatccgccccggcaag
ggcgaccgggagagcacgctcgggtctctcctgctcgccgtgcccgacccgacccgaggc
gggagcggcctgcgctacgtcggacgcgtgggtaccggattcaccgaccgcatcctgcgc
gatctgctgacgcgactcgaaccgctgcgggtggacgccgcaccgctcgacggagtgccc
gccccggatgcctccgacgccctctgggtgcgggcggaagtcgtcggcgaggtcgagttc
gcgaactggactccggacggcgtgctccgtcatgcccgctggcgaggtctgcgccccgac
aagagcccggacgagatctccatcgaggcctga
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