Methylophaga marina: GCM100_23080
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Entry
GCM100_23080 CDS
T09183
Symbol
srmB
Name
(GenBank) ATP-dependent RNA helicase SrmB
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
mmaf
Methylophaga marina
Brite
KEGG Orthology (KO) [BR:
mmaf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
mmaf03009
]
GCM100_23080 (srmB)
Enzymes [BR:
mmaf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GCM100_23080 (srmB)
Ribosome biogenesis [BR:
mmaf03009
]
Prokaryotic type
rRNA helicases
GCM100_23080 (srmB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UTP25
SNF2-rel_dom
AAA_22
P-loop_SecA
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
BDZ74589
LinkDB
All DBs
Position
complement(2242687..2243898)
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AA seq
403 aa
AA seq
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MSFEDLMLEDSLLSAIAAHGYTTPTPIQEETIPLILAGQDVLACAATGTGKTAAFVVPLL
QKLWDRKHRSHEPVALILAPTRELAFQIQHVLKTFSKEDPIDIAMITGGQAPTAQQKVLD
EGCDVIIATPGRLLNLVEQEQADLSLIEFVVIDEADRMLDMGQGPDVATLLASITTAFQT
CLFSATLAGAGVEIFANTLLPDATRVDVNASNHYAEQVEQRVYLADNREHKQALLKAMIQ
SDECKSALVFCNKKERADEVADYLQSQNISAQVVHGEFSQADRRERTRKFRQGKIKVLVA
TDVASRGLDLPQVSHVVNYDVPFRGDIYIHRVGRTGRAGQSGIAVNLVESHDQKNLERIE
HHIGQSLPVVKMKGLAPKGKVNKQKSKKEPKARYISKKDRAQE
NT seq
1212 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttgaagatctcatgttagaagacagcctgttgagcgctatcgctgctcacggc
tacaccacccctacgccaattcaagaagaaacgatcccgcttattttagccggtcaggac
gtattggcctgtgcggccacagggacaggcaagaccgcagcatttgttgtgcctttatta
caaaagctctgggacagaaagcatcgttcacatgaacctgtcgctctcattctggctcca
acacgtgagctggccttccagattcaacatgtgcttaaaaccttcagtaaagaagatcca
atcgatattgccatgattaccggtggtcaggcacccactgcccaacaaaaggttttagat
gaaggctgtgatgtcatcattgccacacccggccgtttattgaacttagttgaacaagag
caggccgatttatcactgattgagtttgtggtgatagatgaagcggatcgtatgctggat
atgggacaaggtcctgatgtcgcgacattattagcttcaattacaacagcattccaaacc
tgcttgttctccgccacactggctggtgccggtgtggaaatttttgctaatactttactg
cctgatgctacccgagtggatgtgaatgcttcaaaccactatgccgaacaggtcgagcag
cgtgtctatttagccgataatcgtgaacataaacaggcactactcaaagccatgattcaa
tcggacgagtgtaaaagtgctttggtcttttgtaataaaaaagaacgtgcagatgaagtg
gctgattacttacaatcacaaaatatctctgctcaggtagtgcatggtgaattctctcag
gcagatcgccgagaacgaacacgtaaattccgtcaaggaaaaatcaaagtcttagttgca
acagatgtagcttcacgtggactggatttaccgcaagtgagccacgtcgttaactatgat
gtgccgtttcgtggtgatatttatattcatcgtgttggcagaaccgggcgagctggacaa
tcaggtattgctgtcaatctggtggaaagccatgaccaaaaaaaccttgagcgcatcgaa
catcatattggccagtcattacctgtagtaaaaatgaagggcttggcaccgaaaggcaaa
gtcaataaacaaaagagtaaaaaagagcccaaagccagatacatttctaaaaaagaccgt
gcccaagaataa
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