Methylophaga marina: GCM100_23170
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Entry
GCM100_23170 CDS
T09183
Name
(GenBank) hypothetical protein
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
mmaf
Methylophaga marina
Pathway
mmaf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mmaf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GCM100_23170
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmaf03019
]
GCM100_23170
Enzymes [BR:
mmaf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GCM100_23170
Messenger RNA biogenesis [BR:
mmaf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GCM100_23170
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
DUF6830
Motif
Other DBs
NCBI-ProteinID:
BDZ74598
LinkDB
All DBs
Position
2250737..2251936
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AA seq
399 aa
AA seq
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MITEGLDILIGTPGRLLDYQKQRVFSLKFIDVVVLDEADRMFDLGFIKDVRYFLRRIPKP
EQRLGMLFSATLSYKVSELAYEHMNNPEKVQVEPEKMMGDRIEEWVYYPANDEKIPLLLA
LIKRLNPERGIIFVNTKQAADVVWGYLEGNGYKASLLSGDVPQKKRERLLQHFQDGEFPF
LVATDVAARGLHIPEVSHVFNYDLPQDVEDYVHRTGRTARAGASGVAISLACEEYVFSLP
DIEAYIKHKLPLASTSDEQLDTPKPRVKKEKEAAPQRKRHDANKSSKPRRRRPRQEKSND
RCRSTITDKRIFTRWFLLNHAIIRVCLLLLMLPLNTPPPSLIKNKLIQRMSLCQWPPHKI
VSKRNLSGSLSALNVTHLRLNDKTIYYQSLYSNIYISRT
NT seq
1200 nt
NT seq
+upstream
nt +downstream
nt
atgattacggaggggctggatattttaatcggcacgcctgggcgcttgctggattatcag
aaacagcgcgtgttcagtttaaaattcattgatgtcgttgtacttgatgaagccgatcgg
atgtttgatctgggctttattaaagatgtccgttatttcctgcgtcgtatccctaaaccc
gagcaacgtttagggatgttgttttcagcgacattgagctacaaagttagcgaattagct
tacgaacatatgaataacccagaaaaagttcaggtcgaacctgaaaaaatgatgggggat
cgtattgaagaatgggtgtactacccggcgaatgatgaaaaaattcctctgctgctggca
ttgattaaacgtttgaatcctgaacggggcattatttttgtcaatacaaaacaagctgca
gatgttgtctggggatatttggaggggaatggctacaaggcttcattattgtctggtgat
gtgccccagaaaaaacgtgaacgcttattgcaacatttccaagatggcgaatttcccttc
ctcgtcgccactgatgttgctgcgcgaggattacatattcctgaggtgagtcatgtattt
aattatgatttaccccaagatgtagaggactacgttcatcgcacgggacggactgctcga
gcaggggctagcggtgttgccatcagtttagcgtgtgaagaatatgtattttcactgcca
gatattgaagcttatatcaaacataaattaccattagcatcaacctctgatgagcaactg
gacacacccaagccacgagtaaaaaaggaaaaagaagccgcaccacaacgaaaaagacac
gacgcgaataaatcatcaaagccacgacgcaggcgtccaaggcaagaaaaaagtaatgat
agatgcagatcaacaataacagacaagcgaatttttacccgctggttcctactgaaccac
gcaataatacgcgtttgcctgttacttttgatgctgccgctgaatacaccgccaccatcg
ttgataaagaacaagctgatacaacgaatgtcgttgtgccagtggcctccacacaagata
gtcagcaagcgcaatttgtcaggcagtttatcggcactgaacgtgactcatcttcgtctg
aacgacaaaacaatctactaccaaagtctgtacagcaatatttatatatcaaggacatga
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