Methylocaldum marinum: sS8_4552
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Entry
sS8_4552 CDS
T05638
Name
(GenBank) ssDNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
mmai
Methylocaldum marinum
Pathway
mmai03410
Base excision repair
mmai03430
Mismatch repair
mmai03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mmai00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
sS8_4552
03430 Mismatch repair
sS8_4552
03440 Homologous recombination
sS8_4552
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mmai03400
]
sS8_4552
DNA repair and recombination proteins [BR:
mmai03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
sS8_4552
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
sS8_4552
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
sS8_4552
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHHA1
RecJ_OB
DHH
DUF2065
PhoU
Motif
Other DBs
NCBI-ProteinID:
BBA36482
UniProt:
A0A250KY16
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All DBs
Position
complement(4940474..4942216)
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AA seq
580 aa
AA seq
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MPYYPVKKKIIPRASDRLAAPEFSHLPPLLQRIYTARRLTVADELDRSLAKLPSPWLLSG
MEGMADQLAEAIRQNKSILVIADYDTDGATGCAVAVRGLRLLGAERVSYLVPNRFEYGYG
LTPEIVDLAAQSAPDILLTVDNGISSLEGTAAAKARGMLVFITDHHLPGSELPGADAIVN
PNLAGDRFPSKYLAGVGVMFYVLSAVRIRLRNSGHFSQNGLQEPNLAQLLDLVALGTVAD
VVTLDHVNRILVHQGLQRIRSGQAHAGLLALLEVSGRNSRIITAADLGFAVAPRLNAAGR
LEDMTLGIECLLTDDADAARAMAVRLDQLNRDRREIEEQMKLDALAHLEDLDASLATKAA
LCLFDDSWHQGVVGILASRIKDRLNRPVIAFARTDGDEIKGSARSIPGVHIRDVLSDIAT
RYPNLLRKFGGHAMAAGLSLHRDDLPHFTELFEEEVALHVADLDLDHAIHSDGPLEAHEL
DLDIAELLRQAGPWGQGFPEPLFDGEFEVTQSRIVGDRHLKLVLKIPNSEKFIDGIAFFV
DEPSDWLACRHLRAVYRLDINEFRDARNVQLRMEYMEGRD
NT seq
1743 nt
NT seq
+upstream
nt +downstream
nt
atgccttattatccggtcaaaaagaaaattatcccccgcgcctccgatcggctcgccgct
cccgagttttcccatctcccgccgctgctgcaacgcatttacaccgcgcgccgtctgacc
gtcgccgacgaactggaccgctccctggcgaaactaccctcgccatggctgttgagcggc
atggaaggtatggccgatcagttggcggaagccattcggcaaaataagagcattctggtc
atcgccgattacgacaccgacggcgccaccggctgcgccgtggcggtccggggcctcagg
ctgctcggcgccgaacgggtctcctatctcgtccccaaccgcttcgaatacggttacgga
ctgactccggagatcgtcgacctggccgcccaaagcgcccccgacatactgctgaccgtc
gacaacggcatctccagcctggaaggcacggcggcggcgaaagcccgcggcatgctggtc
ttcatcaccgaccatcacctgccgggatcggagcttcccggcgcggacgccatcgtcaat
ccgaacctggccggagatcggtttccgagcaaatatctggccggcgtcggcgtgatgttt
tacgtgctttcggccgtgcggatccgcttgcgaaattcgggccatttctcccaaaacggg
ctgcaagagccgaatctcgcgcaactcctggacttggtggctttgggcacggtcgccgat
gtggtgacgctggatcacgtcaaccgcatcctggttcatcagggacttcagcggatccgc
tccggacaagcccacgccggattgctggccttgctggaagtttccgggcgcaattcacgc
atcatcacggcagccgacctcggcttcgccgtggcgccccggctcaacgccgccggacgg
ctcgaagacatgaccttgggcatcgagtgcctgctgaccgacgatgccgacgccgcccgc
gccatggcggtccggctcgaccagctgaaccgggatcggcgcgaaatcgaggagcagatg
aaactcgacgccctcgcccatctcgaagacctcgatgcttccttggcgacgaaggcggca
ctctgtttgttcgacgactcctggcatcagggcgtggtcggcatactcgcctcccgcatc
aaggaccgcctgaatcggccggtcatcgctttcgcccgcaccgacggcgatgaaatcaaa
ggctcggcgcgctccattccgggcgtgcatatccgcgacgtcctgagcgacatcgccacg
cgctatccgaacctgctgcgaaagttcggcggacacgccatggccgccggcctgagcctt
caccgggacgatttgccgcattttaccgagctgttcgaggaagaagtggcccttcatgtg
gccgacctggacctcgaccatgccatacacagcgacggccccctcgaagcccacgaactg
gatctggacatcgccgagttgctgcgccaggcgggaccgtggggccaaggctttcccgaa
cccctgttcgacggcgaattcgaggtgacgcaaagccgcatcgtcggcgaccgccatctc
aaattagtcctcaaaatccccaactccgaaaaattcatcgacggtatcgcctttttcgtc
gacgaaccctccgactggctggcctgccgacacctccgcgccgtctaccggctcgacatc
aatgaatttcgcgacgccagaaacgtccaattacgtatggagtacatggaaggtcgcgac
tga
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