Mesorhizobium mediterraneum: LRP31_27285
Help
Entry
LRP31_27285 CDS
T09205
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mmei
Mesorhizobium mediterraneum
Pathway
mmei03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mmei00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
LRP31_27285 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mmei03400
]
LRP31_27285 (ligD)
Enzymes [BR:
mmei01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
LRP31_27285 (ligD)
DNA repair and recombination proteins [BR:
mmei03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
LRP31_27285 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
RNA_ligase
mRNA_cap_enzyme
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
WIW52715
LinkDB
All DBs
Position
5572001..5574547
Genome browser
AA seq
848 aa
AA seq
DB search
MALETYRKKRDFSVTPEPQGRKAPRTGNSFVIQKHDATRLHYDFRLEMDGVLKSWAVTKG
PSLIPGEKRLAVHVEDHPLEYGGFEGTIPKGEYGGGTVILWDRGTWTTIGDAHRGYAKGH
LDFELHGEKLGGRWHLVRMAGKPREKRENWLLIKGDDDAARTEGDPDILDERPESVATGR
KIEDVAGEAPGWSSKTGRIGKHRGRTRAAPPEEQPATVGVPEPSKIKGAKKAALPDFVEP
TLATLVSSAPSGERWLHEIKFDGYRLQARIEAGRVKLLTRSGLDWTKKFGKAVISALADI
PVGTALIDGELVVETSAGASDFSALQADLSEGRSDRFRFYVFDLLHLDGYDLRDVALITR
KQLLEKVIGSDNGIISYSGHFEEDGTLVLRHACRLSLEGVVSKLRDAPYRAGRSKNWVKS
KCSARQEFVVAGYVPSTTSRNAIGSLVLGVYDDGKLHHVGRVGTGYTAAVAQDLFKKLER
IRIPSSPFDERLSAEEARQARYVRPELVAEVEFRAWTADGNLRHASFRGLREDKPAKEII
RETPKTNKAAPKPQRRTVKLTHPDRLYWPDQGVTKEGLADYYAEVWRHASPYIVGRALAL
VRCPSGISGEQFFQKHAWKGLNPNIVLVHDPKDPPDERLISINDLDGLIGLVQSAALEIH
PWGSLVSDWERPDTIIMDLDPGEGVSWEAVIEAAVETRDRLKDAGLVPFIKTSGGKGLHV
VAPVKPKAQWPVVKAFTKAIADSMASDSPGRYVSTITKSKRRGKILVDYLRNQRGATAVA
PYSTRARPGASVSMPLAWDELGPGIGPAYFTVENTPTRLASLSSDPWQDFRAAAAPIEEP
GSRRKKAA
NT seq
2547 nt
NT seq
+upstream
nt +downstream
nt
atggcgctcgagacctaccgcaagaagcgcgatttttccgtcaccccggagccccagggc
cgcaaggcgccgaggacggggaacagcttcgtcatacagaagcatgatgcgacgcggctc
cactatgatttccgtttggaaatggacggcgtcctgaagagctgggccgtcaccaaaggg
ccgagcctgatccccggcgagaagcgccttgccgttcatgtcgaggatcatcccttggag
tatggcggtttcgaaggcaccatcccgaagggcgaatatggcggcggcaccgtcatcctg
tgggacagaggcacctggacgacgatcggcgacgcgcatcgcggctatgcaaaaggccat
ctcgatttcgaacttcacggggagaagcttggcggccgctggcatcttgtgcggatggcc
ggaaagccgcgggagaagcgcgagaactggctgctgatcaagggcgacgatgacgccgcg
cgcacggaaggcgatcctgacattctggacgagcggccggaatccgtcgccaccggccgc
aagatcgaggatgtcgccggagaagcgcccggctggtcgtcgaagacggggcgcattggc
aagcaccgcggccgcacgagggccgctcccccggaagagcagcccgccaccgttggcgtt
ccggagccgtcaaagatcaagggtgccaagaaggcagcgcttcccgatttcgtcgagccg
acgctggcgaccctcgtttcgtccgcgccgtccggagaacgctggctgcacgaaatcaaa
ttcgacggctaccggctgcaggcacggatcgaagccgggcgcgtcaaactgttgacgcgc
agcggtctcgactggacgaagaagttcggaaaggcggtcatttcggcgctggccgatata
cctgtcgggacggcgctgatcgatggtgaactcgtggtcgagacatccgccggcgcgtcg
gatttttccgcgttgcaagccgacctcagcgagggccgcagcgatcgctttcgcttctac
gtcttcgacctgcttcatctcgacgggtacgatctgcgcgacgttgcgttgatcacgcgc
aagcaattgctggaaaaggtcattggtagtgataacggcatcatcagctacagcggacat
tttgaggaggatggcacgctggtcctgcgacacgcctgccggctgagcctggaaggtgtt
gtctccaagcttcgcgatgcgccttaccgcgcgggccgcagcaagaactgggtgaaatcg
aaatgctcggcgcgacaggaatttgtcgtggccggctacgtcccctcgacaacctcgcgc
aatgcgatcggctcgctcgtcctgggtgtctatgacgatggtaagcttcatcatgtcgga
cgcgtcggcaccggctacacggcagcagtcgcacaggacctgttcaagaagctcgagcgg
atacgcattccgtcaagcccgttcgatgagcggctgagcgccgaggaggctcggcaagcc
cgctatgtcaggcctgaactcgtcgccgaagtcgagttccgggcctggaccgccgacggc
aatctgcgccacgcctcgttccgcggattgcgagaagacaaaccggcgaaggagatcatc
cgcgaaacgccgaagacgaacaaggcagcacccaaacctcagcgccggaccgtcaagctc
acccatcccgaccgcctctattggcctgaccagggcgtgaccaaggaaggtctcgccgac
tattatgccgaagtctggcgccatgcatcgccctacatcgtcggccgggcgttagcgctg
gtgcgatgcccaagcggcatttcgggcgagcagttcttccagaagcatgcctggaagggt
ctcaatcccaacatcgtgctggtccacgatcccaaggacccgcccgacgagcggctgatc
agcatcaatgatctcgatgggctgatcggccttgtccagtcggcggcgctggagatccac
ccctggggctcgttggtgagcgattgggagcgtccagacacgatcatcatggacctcgat
cctggcgagggcgtgagctgggaggcggtgatcgaagccgccgtcgagacgcgcgaccgg
ctgaaggatgcagggcttgtccccttcatcaagacctccggcggcaagggccttcacgtc
gtggcgccagtgaagccgaaagcgcaatggcctgtcgtaaaggccttcaccaaggcgatt
gccgactccatggcgtccgacagcccaggccgttacgtctcgaccatcaccaagtccaaa
cgacgcggaaaaattctcgtcgactatctgcgcaaccagcgcggtgcgaccgcagtcgcc
ccctattcgacaagagcacgaccgggtgcgtcggtgtcgatgccgcttgcctgggacgaa
ctcggccccggcatcggaccggcctattttacggtcgagaacacaccaacccggcttgcc
tcgctgtcgtcggatccctggcaggattttcgagcagcagcagcgccgatcgaagaaccg
ggaagccggcgcaagaaagcggcttga
DBGET
integrated database retrieval system
