Mycolicibacter minnesotensis: MMIN_26210
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Entry
MMIN_26210 CDS
T06638
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mmin
Mycolicibacter minnesotensis
Pathway
mmin03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mmin00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MMIN_26210 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mmin03400
]
MMIN_26210 (mfd)
Enzymes [BR:
mmin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MMIN_26210 (mfd)
DNA repair and recombination proteins [BR:
mmin03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MMIN_26210 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
AAA_22
DUF3638
MFD_D3
Motif
Other DBs
NCBI-ProteinID:
BBY34560
UniProt:
A0A7I7R946
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All DBs
Position
2790878..2794522
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AA seq
1214 aa
AA seq
DB search
MTAPGYQTVHTPIAGLVGQALTAPAFAELIERAGESPAELSLIGPVGARPFTAAALARNA
PLLVVTATGHEADDLTAELRGVYGDAVALFPSWETLPHERLSPGVDTVGARLLLLRRLAY
PDDARLGPPLRVVVTTARSLLQPMTGQLDAVEPVLLAVGDETSFEAVIARLVELAYTRVD
LVGKRGEFAVRGGILDLFPPTAEHPARIEFWGDEITEIRPFSVADQRSIPEVEVGTVVAM
PCRELLLTDDVRARAAELAGAQPQTDNAVIGTVGEMLAKLAEGIPVDGMEALGPVLRPGP
QALLTDQLRAGTPVLLCDPEKIRARAADLIKTGREFLEASWSVAAIGGDAPIDIEELGGS
GFRDLAEVKKVALDTGHPWWTLSQLPDPEATELDVRPSPSARGRQRDIDEIFAMLRAHTA
TGGRAAVVAPGVGTARRLVEQLAESETAATLLEAGAAPQPGVVGVLQGPLHEGLVIPGAN
LVVVTEADLTGNRVSGPEGKRLAAKRRNAVDPLALTAGDLVVHDQHGIGKFVEMTERTVG
GARREYLVLEYASGKRGANGTDKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWSQTKTKA
RKAVREIADELVALYAKRQAAPGHAFAPDSPWQAEMEDAFGFTETMDQLTAISEVKADME
KPVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFSTRMAGFP
VTVKGLSRFTDAAESKTTIAGLADGSVDVVIGTHRLLQTGVRWKDLGLVIVDEEQRFGVE
HKEHIKALRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEDRYPVLTYVGAHDDKQ
VAAALRRELLRDGQVFYVHNRVSSIDAAAARVRGLIPEARVVVAHGQMPEEMLETTVQGF
WNREYDILVCTTIIETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLYP
RETPLTETAHDRLATIAQNNELGAGMAVAMKDLEIRGAGNVLGVEQSGHVAGVGFDLYVR
LVGEAVEAYRAAFNGETVTTEEVKDVRIDLPVDAHLPPEYINSDRLRLEAYRRLAAAPDE
AAIGAVIEELTDRYGPLPEPADRLVAVARLRLLCRAAGVTEVSAASATTLRLAPLTLPDS
AQLRLKRMHPSASYRATTATVQVPIPRAGGAGASVGAPRLRDIELVQMVADLISALDGKP
QGQVDVTGAVPAVR
NT seq
3645 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcaccggggtaccagactgtccacaccccgatcgcggggctcgtaggccaggcg
ctcaccgcgccggccttcgccgaactcatcgagcgcgcgggcgagtcgcccgccgaactc
agcctgatcggcccggtcggtgcgcggccgttcaccgccgccgccctggcccgcaacgcg
ccgctgctggtggtcaccgccaccggccacgaggccgacgacctgaccgcggagctgcgt
ggtgtctacggcgacgcggtggcgctgttcccgtcgtgggagacgctgccgcacgagcgt
ctctcacccggagtggacaccgtcggcgcccgcctgctgctgctgcgccggctggcctac
cccgacgacgcacgcctgggcccgccgctgcgggtggtggtgaccaccgcccggtcgctg
ctgcagccgatgaccggccagctggacgccgtcgagccggtactgctggctgtcggtgac
gagacttcgttcgaggcggtgatcgcccggctggtcgagttggcctatacccgggtggac
ttggtgggcaagcgcggtgagttcgctgtgcgcggcggcatcctcgatctgttcccgccg
actgccgaacatccggcgcgcattgagttctggggcgacgagatcaccgagatccggccg
ttctcggtggccgatcagcgctcgatccccgaggtcgaggtgggcacggtggtggcgatg
ccctgccgggagctgttgctcaccgatgacgtgcgggcccgcgccgcggaactggcgggc
gcgcaaccgcagaccgacaatgctgtcatcggaaccgtcggtgagatgctggccaagctg
gccgagggcatcccggtcgacggcatggaggcgctggggccggtactgcggcccggcccg
caggcgctgttgaccgatcagctgcgcgccggcaccccggtgctgctctgcgatccggag
aagatccgggcccgcgccgccgacctgatcaagaccggccgcgagtttctcgaggcctcc
tggtcggtcgcggcgatcggaggcgatgcaccgatcgacatcgaagagctcggtggatcg
ggattccgtgacctcgccgaggtgaagaaggtggcgctggacaccgggcatccctggtgg
acgctgagccagctgcccgaccccgaggcgaccgaactcgatgtgcgcccctcgccgtcg
gcccggggccgccaacgcgacatcgacgagatcttcgccatgttgcgggcgcacaccgcg
acgggcggacgtgcggcggtggtcgcccccggtgtgggcaccgcccggcggctcgtcgag
cagctggccgaatccgagaccgcggcgacactgttggaggccggcgcggccccgcagccc
ggggtggtcggggtgttgcagggtccgctgcacgaggggctggtgatccccggcgcgaat
ctggtggtggtcaccgaggccgacctgaccggcaaccgggtcagcggaccggaaggcaag
cggttggcggccaaacgccgcaacgccgtcgacccgctggcgctgacggccggggatctg
gtggtccacgaccagcacggcatcggcaagttcgtggagatgaccgagcgcaccgtcggc
ggcgcgcgccgcgaatacctcgtgttggagtatgcgtcgggcaagcgtggcgccaacgga
accgacaagctctacgtcccgatggactccctggaccagctgtcccgctacgtcggcggg
caggccccggcactgagccgcctgggcggtagcgactggagccagaccaagaccaaagcg
cgcaaagcggttcgggagatcgccgacgaactcgtcgccctctacgccaagcgccaagcg
gcacccgggcacgccttcgccccggacagtccgtggcaggccgagatggaggatgcgttc
gggtttaccgagaccatggaccagctcaccgcgatcagcgaggtcaaggccgacatggaa
aagccggtcccgatggaccgggtgatctgcggcgacgtcggctacggcaagaccgagatc
gcggtccgggcagccttcaaggcagttcaggacggcaagcaggtcgcggtattggtgccc
accacgctgctggccgatcagcacctgcagaccttcagcacccggatggccggattcccg
gtcaccgtcaagggactgtcgcgcttcaccgacgcggccgagtccaagaccaccatcgcc
ggtctggcggacggctcggtggacgtggtgatcggcacccatcggctgctgcagaccggg
gtgcgctggaaggacctcggcctggtgatcgtcgacgaggagcagcggttcggcgtcgag
cacaaagagcacatcaaggcgttgcgcacccatgtcgacgtgctcaccatgagcgccacc
ccgatcccgcgcaccctggagatgagcctggccggcatccgggagatgtcgaccatcctc
actccgcccgaagaccgctacccggtgctcacctatgtcggcgcacacgacgacaagcag
gtggcggccgcgctgcgccgcgagctgctgcgcgacggccaggtgttctacgtgcacaac
cgggtcagctcgatcgacgccgccgcggcccgggtgcggggtctgatacccgaagcccgg
gtggtcgtcgcgcacggccagatgcccgaggagatgctggagaccacggtgcagggcttc
tggaaccgggagtacgacatcctggtgtgcaccacgatcatcgagaccggcctggacatc
tccaacgccaacaccctgatcgtcgaacgcgccgacaccttcggcctgtcgcagctgcat
cagttgcggggccgggtgggccgcagccgggaacgcggctacgcctacttcctctacccg
cgcgagactccgctgaccgagaccgcccacgaccggctggccaccatcgcccagaacaac
gaactgggcgccggcatggcggtggccatgaaagacctggagatccgaggcgccggcaac
gtgctgggggtggagcagtccgggcacgtcgccggggtcggcttcgacctgtacgtgcgg
ctggtcggcgaggccgtcgaggcgtatcgggcggcgttcaacggtgagacggtcaccacc
gaggaggtcaaggacgtccggatcgacctgccggtggacgctcatctgccgccggagtac
atcaactccgaccgcctgcggttggaggcgtaccgccgcctggcggccgcccccgacgaa
gccgcgatcggggcggtgatcgaagaactgaccgatcgctacggaccgctgcccgaaccg
gcggatcgactggtggcggtggcgcgactgcggctgctgtgccgcgcggccggagtcacc
gaagtgtcggcggcgtcggcgaccacgctgcggctggctcccctcaccctgccggactcg
gcccagttgcggctcaagcggatgcatccctcggccagctaccgtgccaccacggccact
gtgcaggttccgataccgcgggccggcggcgcgggcgcctccgtcggcgcgccacgtctg
cgcgacatcgagctcgtccagatggtggccgacctgatttcggcgctggacggcaaaccg
cagggccaggtggacgtcaccggcgcggtgcccgcagtacggtag
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