Monoraphidium neglectum: MNEG_3003
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Entry
MNEG_3003 CDS
T05028
Name
(RefSeq) CCR4-NOT transcription complex subunit 3
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
mng
Monoraphidium neglectum
Pathway
mng03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mng00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MNEG_3003
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mng03019
]
MNEG_3003
Messenger RNA biogenesis [BR:
mng03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
MNEG_3003
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
MNEG_3003
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
25735881
NCBI-ProteinID:
XP_013903973
UniProt:
A0A0D2LE17
LinkDB
All DBs
Position
Unknown
AA seq
854 aa
AA seq
DB search
MAAQRKLQQEIDRCLKRVQEGIDEFDGIWEKVHDTDNSNQKEKFEADLKKEIKKLQRLRD
QIKTWISSADVKDKTQLVEARKAIEREMERFKLCEKEAKMKAFSKAALGQADKLDPREQA
KMETREWINSAVDTLNEQIEKYEYEIEELAATGGKKKSKPPPRIEFLQSVIAVHKKHIIK
LEAALRCLDNDALEAEDLDPIRDSLEYYLNAEDSDHADTVDDLYADIAETLEAVETVAGP
GTLVSHGSKGGSMGGGKEGREGVRSGGGKGGDEESKDRDRERERAAAVKAQLIAQGAISK
SMDDDDSRGRAGARPPSVAPPTPTGSAPIQSPGITASPGGRAPTALQLPAAARSLSDSGS
QLALAQAQAQQQQQQQQQQQQQQQQQQQQQQQQQEGGAGLVPPSPQQRMQPTLAAPPITV
LSPSSTPGPGPGPEQLGSGAVLSPLAAAAAAAVLPGALRPGGPLSPSAAAAAELAAAAAS
QSGAGPTPATAQGGAPPGGRLGAWMAGAPPSAAEAAKPAASASTKAPPPGMPVPAAAGAT
GGLGPSPGGGAVSQLKGAQQLDAGTPGQALPEGNEEAIPAGASPTGGTAAAVPAAASLPG
ASVPSQASGAPVEGGGEGSSGAAAATVAGLASVPAAAAVVAAADALADSMAGLSMDSSAS
GAAAFEVLSRLASQDLGFGQLPAVPVGVSSSSLGGGGGGGLGASLGVLDSAFRAAQPQPV
DSDWARSRPRHPVATPPTFPRAPPDIMSAPGLFRRMDPEALFFAFYYQPDTYQQYLAAQE
LKRQSWRYHKHHNAWFQRYAEPSVTNDEYEQGTYVYFDFNIMHDDLQTGWCYRRKENFTF
RYDALEDELAVGAG
NT seq
2565 nt
NT seq
+upstream
nt +downstream
nt
atggcagctcagcgaaagctgcagcaagagatcgacagatgcctgaagcgggtacaagag
ggcatcgacgagtttgacgggatctgggaaaaggtccacgacaccgacaactcgaatcag
aaggagaagtttgaggccgatctcaagaaggagatcaaaaagctgcagcgtctcagggac
cagattaagacatggatctctagcgcggatgtgaaggacaagacgcagcttgtggaggcg
cgcaaagcaattgagcgcgagatggagcggttcaagctgtgcgaaaaggaggccaagatg
aaggccttcagcaaggcagcgctggggcaggccgacaagctcgaccctcgggagcaggcc
aagatggagacgcgggagtggataaattcagctgtggatacgctcaacgagcagattgag
aagtacgagtacgagattgaggagctggcggcaacgggcggcaagaagaaatcaaagccg
cccccccgcatcgagttcctccagtctgtgatcgctgtgcacaagaagcacattatcaag
ctggaggctgctctgcggtgcctggacaacgatgccctggaggcggaggacctggacccg
attcgtgacagcctggagtactacctgaacgcggaggactctgaccacgcggacacggtg
gacgacctgtacgccgacatagccgagaccctggaggccgtcgagacggtggcgggcccg
gggaccctggtcagccacggcagcaagggcggcagcatgggcggcggcaaggaggggcgt
gagggcgtgcgcagcggcggcggcaagggcggcgacgaagagtccaaggaccgggaccgg
gagagggagcgcgcggcagctgtcaaggcgcagctcatcgcgcagggcgccatcagcaag
tctatggatgacgacgattcgcgggggcgggccggcgcgcggccacccagcgtggcgccc
cctacacccacgggctctgcacccatacagtcgcctggcatcacagccagccctgggggc
cgcgcgcccactgcgctgcagctgcctgccgcagcacgctccttgtcagacagcggcagc
cagctggcgctggcacaggcgcaggcacagcagcagcagcagcagcagcagcagcagcag
cagcagcagcagcagcagcagcagcagcagcagcagcagcaggagggcggcgctggccta
gtgccgccgtcacctcagcagcggatgcagccgacactagcggcaccgccgatcacagtg
ctctcgccgtcgtcgacgccagggcccgggccggggccagaacagctgggatctggggcg
gtgctgtcgccccttgcagcagcggcagcagcggcggtcctgcctggtgcgctcaggcct
ggtggacctctgtcgccatctgcggcagctgcggcggagctggcggcagcggcggcatcc
cagagcggcgcggggccgacgcctgccacggctcaggggggcgccccacctggtgggcga
ctgggtgcgtggatggcaggcgcgccaccatcagcagcagaggcggccaagccagcggcc
tctgcatccaccaaagcgccgccaccaggcatgccagttccggcggcagcgggcgcaacc
ggggggctggggccaagcccaggtggcggtgctgtctcgcagctgaagggtgctcagcag
ctcgatgcggggacgccgggccaggcgctgcctgagggcaatgaagaggccatcccggca
ggcgcgtcgccgacgggcggcacagcagcagcagtgccggcggcggcgtccctgccaggc
gcctccgtgccttcccaggcgagcggcgcgccggttgagggtggtggcgaggggtcgtca
ggcgcggcagccgcgacggttgcagggttggcgtcggtcccggctgcggcagctgtggtg
gctgcggcggacgccttggcagacagcatggccgggctgagcatggacagcagcgcgtcg
ggggcggccgcgttcgaggtgctgagccggctggcgtcgcaggacctgggctttgggcag
ctgcccgctgtgcccgtgggcgttagcagcagcagcctgggtggcggcggcggagggggc
ctgggcgcgtccctgggtgtgctggactcggcgttccgcgcggctcaacctcagcccgtg
gacagcgactgggcgcgcagccggccgcggcaccccgtggcaacgccgcccacgttcccg
cgcgcgccgcccgacatcatgtcggccccgggcctgttccggcgcatggaccctgaggcc
ctgttcttcgcgttctactaccagccggacacctaccagcagtacctggcggcgcaggag
ctcaagcgccagagctggcgctaccacaagcaccacaacgcctggttccagcgctacgcg
gagcccagcgtcacaaacgacgagtacgagcagggcacctacgtgtactttgatttcaac
atcatgcatgacgacctgcagacgggctggtgctacagaagaaaggagaatttcaccttc
aggtatgacgccctggaggatgagctggcggtgggcgccggctga
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