Mus pahari (shrew mouse): 110317486
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Entry
110317486 CDS
T05929
Symbol
Vps39
Name
(RefSeq) vam6/Vps39-like protein isoform X1
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
mpah
Mus pahari (shrew mouse)
Pathway
mpah04140
Autophagy - animal
mpah04148
Efferocytosis
mpah05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
mpah00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
110317486 (Vps39)
04148 Efferocytosis
110317486 (Vps39)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
110317486 (Vps39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
mpah04131
]
110317486 (Vps39)
Membrane trafficking [BR:
mpah04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
110317486 (Vps39)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps39_2
Vps39_1
CNH
Clathrin
KCTD11_21_C
EcoR124_C
Motif
Other DBs
NCBI-GeneID:
110317486
NCBI-ProteinID:
XP_021047590
Ensembl:
MGP_PahariEiJ_G0025607
LinkDB
All DBs
Position
3:complement(103727254..103764142)
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AA seq
886 aa
AA seq
DB search
MHDAFEPVPILEKLPLQIDCLAAWEEWLLVGTKQGHLLLYRIRKDVVPADVASPESGSCN
RFEVTLEKSNKNFSKKIQQIHVVSQFKILVSLLENNIYVHDLLTFQQITTVSKAKGASLF
TCDLQHTETGEEVLRMCVAVRKKLQLYFWKDREFHELQGDFSVPDVPKSMAWCENSICVG
FKRDYYLIRVDGKGSIKELFPTGKQLEPLVAPLADGKVAVGQDDLTVVLNEEGICTQKCA
LNWTDIPVAMEHQPPYIVAVLPRYVEIRTLEPRLLVQSIELQRPRFVTSGGSNIIYVASN
HFVWRLIPVPMATQIQQLLQDKQFELALQLAEMKDDSDSEKQQQIHHIKNLYAFNLFCQK
RFDESMQVFAKLGTDPTHVMGLYPDLLPTDYRKQLQYPNPLPTLSGAELEKAHLALIDYL
TQKRSQLVKKLNDSDHQSSTSPLMEGTPTIKSKKKLLQIIDTTLLKCYLHTNVALVAPLL
RLENNHCHIEESEHVLKKAHKYSELIILYEKKGLHEKALQVLVDQSKKANSPLKGHERTV
QYLQHLGTENLHLIFSYSVWVLRDFPEDGLKIFTEDLPEVESLPRDRVLNFLIENFKALA
IPYLEHIIHVWEETGSQFHNCLIQLYCEKVQSLMKDYLLSLPTGKSPVPAGEEGGELGEY
RQKLLMFLEISSHYDPGRLICDFPFDGLLEERALLLGRMGKHEQALFIYVHVLKDTKMAK
EYCHKHYDQNREGNKDVYLSLLRMYLSPPSIHCLGPIKLELLEPQANLQAALQVLELHYS
KLDTTKAINLLPANTQINDIRIFLEKVLEENAQKKRFNQVLKNLLHAEFLRVQEERILHQ
QVKCIITEEKVCMVCKKKIGNSAFARYPNGVVVHYFCSKEVNSADT
NT seq
2661 nt
NT seq
+upstream
nt +downstream
nt
atgcatgacgctttcgagccggtgccgatcctggaaaagcttcccctgcagatcgactgc
ctggctgcctgggaggaatggcttcttgttggaaccaagcaagggcatcttcttctctac
aggattcggaaggatgttgtgccagcagatgtagcctcacctgaaagcggcagttgtaac
aggtttgaggtaacactggagaagtccaataagaacttttccaaaaagatccagcagatc
catgtggtttcccagtttaagattctagtcagcttgttagaaaacaacatttatgtccat
gacttactgacatttcaacaaatcactacagtctcaaaggccaagggagcatcgctgttc
acctgtgacctccagcacactgagacaggtgaggaggtgttgcggatgtgtgtggcagtg
aggaagaagctgcagctgtacttctggaaggacagagaattccacgaactacagggagac
tttagtgtgcccgatgtgcccaagtccatggcatggtgtgaaaattctatctgcgttggt
ttcaagagagactactacctgatcagggtggatggaaaggggtccattaaagagctcttc
ccaacaggaaagcagttggagcccttagttgcccctctggcagatggaaaagtagctgtg
ggtcaggatgatctgactgtggtgcttaacgaggaaggcatctgcactcagaaatgtgcc
ctgaactggacagacatcccagtggccatggagcaccagcctccatacattgttgcagtg
ttgccacgatatgtggagatccggacactggagccaaggcttctggtccaaagcatcgag
ctgcaaaggccccgcttcgttacatcaggaggatcaaacattatctatgtggccagcaat
cattttgtttggagactcattcctgtccccatggcaacccaaatccaacagcttctccag
gacaagcagtttgaattggctctgcagcttgcagaaatgaaagatgactcagacagtgaa
aagcagcagcagattcatcacattaagaacctgtatgccttcaacctcttctgccagaag
cgctttgatgagtccatgcaggtctttgctaaacttggcacagatcccacccacgtgatg
ggcttgtaccccgacctactgcccacggactacaggaagcaactgcagtacccgaacccg
ctgcccacactctctggtgctgaactggagaaggctcacttggctctcattgactacctg
acacagaaacggagccagttggtaaagaagctgaatgactcagatcaccagtccagcacc
tccccactcatggagggcactcccaccatcaagtccaagaagaagttacttcagatcatc
gacaccactctgctcaagtgctacctccatacaaatgtagccctggtggctcccttgctg
cgcctggaaaacaaccactgtcacatcgaggagagtgagcatgtgctgaagaaggctcac
aagtacagcgagctaatcatcctgtatgagaagaaggggctccatgagaaagctctgcag
gtgctagtggatcagtccaagaaagcaaactcacctttgaaaggtcacgagaggacggtg
cagtatctgcagcatttaggcacagaaaaccttcatttgattttttcctactcagtctgg
gtgctgagagacttcccagaagatggcctgaagatattcactgaagacctcccagaggta
gagtctctgccacgagatcgagtgctcaacttcttgatagagaatttcaaggctctggcc
attccttatctggaacacatcatccacgtgtgggaggagacaggctcacagttccacaat
tgcctgatccagctctactgtgagaaagtgcagagtctgatgaaagactacctcctgtcg
ctgcccacaggtaaaagtccagtccctgctggagaggaagggggtgaactgggagaatac
cgacagaagctgctcatgttcttggagatctccagccactatgatccaggccggctcatc
tgtgactttccctttgatggcctcttagaagaaagagctctcctgttggggcgcatgggg
aagcacgaacaagctctcttcatctatgtccacgtcttgaaggacacaaagatggctaag
gagtactgccacaaacactacgaccagaacagagaaggcaacaaagatgtgtatctgtcc
ctgcttcggatgtacctgtcacctccaagcattcactgcctggggccaatcaaactggag
ctcctggagccacaggccaacctccaggctgccctgcaagtcctagagctgcactacagc
aaattagacactaccaaggcaatcaaccttctgccagcaaacactcagatcaatgacata
cgcatctttctagaaaaggtcttagaagaaaatgcacaaaagaaacggttcaatcaagtg
cttaagaatcttctccatgcagagttcctcagggttcaggaagagcggattttacaccag
caggtgaagtgcatcatcactgaggagaaggtgtgcatggtgtgcaagaagaagattggg
aacagtgcatttgcaagataccccaatggagtggttgtgcactacttctgctccaaagag
gtaaactcagccgacacctga
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