Mus pahari (shrew mouse): 110338358
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Entry
110338358 CDS
T05929
Symbol
Pnldc1
Name
(RefSeq) poly(A)-specific ribonuclease PNLDC1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
mpah
Mus pahari (shrew mouse)
Pathway
mpah03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mpah00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110338358 (Pnldc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mpah03019
]
110338358 (Pnldc1)
Enzymes [BR:
mpah01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
110338358 (Pnldc1)
Messenger RNA biogenesis [BR:
mpah03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
110338358 (Pnldc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
110338358
NCBI-ProteinID:
XP_021077354
Ensembl:
MGP_PahariEiJ_G0023361
LinkDB
All DBs
Position
21:3988108..4008743
Genome browser
AA seq
531 aa
AA seq
DB search
MDVDADEFEQSLPLLQELVAGADFVGLDIEFTGLRSNLSRPQQISLFDLPSEWYLKTRQS
VQQFTICQIGLSVFSSIEGESNKYVAHSCNFFLFPTTFGILDSEFSFQASSVQFLNQYGF
DYNKFLKNGIPYMNEEQEKKIKHSILRGNWRVRSSLDKDQIKVVIDKVTQWLDLAEEGDQ
MTLPGISGFQAFEVQLVLRQALPNIWTVLKEEGVIVKKVSQPHRWYLEHASCDQVSCWKE
QILLSARGFSVFFQMLVKARKPLVGHNMMMDLLHLHEKFFRPLPESYDQFKQNIHSLFPV
LIDTKNVTKDIWKELRFPRVSNLSEVYDVLSSNLNPTKDSGPVIIHARQCEKYAETKCPH
EAAYDAFLCGSVLLKVAHLLLQRVHGSGAVHEPAFPQYLDVLSPYLNQVNLIRAGVPKIN
FSGPDYPSIRPPVLILTVKRWPGVSEHQVYREFQNLCKFDVRRFTRSQFLLLTNKFKDAR
SVLKEYRSHPTLQVSLYRYWRHSPNITCLLQVCGIVTTWAMIAFLLGRSRP
NT seq
1596 nt
NT seq
+upstream
nt +downstream
nt
atggacgtggacgcggacgaatttgagcagagccttccactcctgcaggagcttgtcgcg
ggtgcggacttcgtgggtctggatatagagttcacaggtctgcgttcaaacttgtctcgg
ccccaacagatcagtctttttgacttgccatctgagtggtatctgaagacccggcagagt
gttcagcagtttacaatctgtcagattggattgtccgtgttttccagcatcgaaggagag
tcaaacaagtatgtagcacactcctgcaatttctttctcttccctacaacatttgggatc
ctggactcagagttctctttccaggcatctagtgtgcagtttctgaatcagtatggcttc
gactataacaagttcctcaaaaacggaatcccatacatgaatgaagaacaggagaagaaa
atcaagcacagcatcctaagagggaactggagagtccgaagctctctggataaagaccaa
atcaaggtggtgattgataaggtgacccagtggctggacctggctgaggaaggtgaccag
atgactctgcctggcatctctgggttccaagcctttgaggtccaactggtgctgaggcag
gccctccctaacatctggacagtgctgaaagaggagggggtgattgtgaagaaggtgagc
cagccacatcgctggtaccttgagcacgcctcttgtgaccaagtcagctgttggaaggaa
cagattcttctctcagcaagaggcttctctgtcttttttcagatgttggtgaaggcccgg
aagcccttggtaggacataacatgatgatggacctactgcatctccatgagaagttcttc
cgacctcttccagaaagctacgatcagtttaagcagaacatccatagcctgtttcctgtc
ctcatcgacactaagaacgtgacaaaggacatctggaaggaactgcgtttcccacgagtc
tccaacctctcagaagtgtacgacgtgctgagcagtaacttgaatcccactaaggattct
ggaccggtgattattcatgcaagacagtgtgaaaaatacgctgagaccaagtgccctcac
gaagcagcctatgacgctttcctctgcgggtcagttcttttgaaagtggctcacttgctc
ctacagagggtgcatggcagcggtgctgtgcacgagcctgccttcccccaataccttgat
gtgctgtcgccttacttgaaccaagtgaaccttatccgagctggggttccgaaaattaat
ttttctggccccgattaccccagcatccgccctcctgtactcatcctcactgtcaagagg
tggcctggggtgagcgagcaccaggtctaccgagagttccagaatctctgcaagttcgat
gtcaggcggttcactcgaagccagttcctgctcctgaccaataagtttaaggatgcccgc
agtgtcttgaaggagtacaggagccacccaaccctacaggtctccctgtaccggtactgg
agacattcccccaacatcacctgcctgttacaggtctgtggcatagtcaccacctgggcc
atgattgcatttctcctgggaagatccaggccctga
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