Microbacterium paludicola: BO218_04155
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Entry
BO218_04155 CDS
T04601
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mpal
Microbacterium paludicola
Pathway
mpal03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mpal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BO218_04155
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mpal03400
]
BO218_04155
Enzymes [BR:
mpal01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BO218_04155
DNA repair and recombination proteins [BR:
mpal03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BO218_04155
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
LigD_N
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
APF33491
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Position
864379..866844
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AA seq
821 aa
AA seq
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MAGEQTVRVDGRRLRLSNLDKVLYPRTGTTKGEVIDYFSRIAPLMLPHLDRRPVTRKRWP
EGVEQPDFFAKALEPGAPSWLPRMPIDHSSGSKDYPLVEEVASLVYLAQVASLELHVPQW
RFTDAGERGSPDRLVLDLDPGPGVGLAECAEVARWVRSILSDMGMELFPVTSGSKGIHLY
APLAGAKTSDQASAFAKELARALEADHPDLVISQMTRSARTGKVFLDWSQNNGSKTTIAP
YSLRGRDEPTVAAPRTWDELDDPDLRHLRFDEMLERADEVGDLLAALAPRRTAPLAPYLA
KRSADRTPEPMPDAVSGAAAGVAGTAPAGKPRFVVQEHHARRLHYDLRLERDGVLVSWAV
PRGIPETTDRNHLAVMTEPHPLEYLTFHGEIPAGEYGAGTMTIWDTGVYDLEKWREDEII
FTLRGTTGGTAHDARLVLIRTGGSGEKSQWLLHRMKTEAPGSAPSAPAGSARPAASARPP
ASAHSDAETGASTIAAGPVSPMLAVSSSRGAARATAERWGPWVEFKWDGVRAIAYWDGER
MRLHARSGTDITARYPELTGEDADLGLGETPLVLDGEIVALDGAGRPSFPLLQNRMHLTK
ARDIARERDRTPADLFVFDMLRHGDRDVTTLPLRERRRLLESATAHAKPPLTVPPVTDDL
DAALTVARELDLEGAVVKDPSSRYRPGARSEEWLKVKLTRTQDVVVGAIRPGKGERRGGI
GSLLLGIPDDDGALHYAGRVGSGFSDAELARLTAALEPLRSKENPFVGIPAADASDARWV
RPELVGEVEFAEFTPGGILRHARWRGLRPDRTPGGVRREES
NT seq
2466 nt
NT seq
+upstream
nt +downstream
nt
atggcaggagagcagacggtccgggtcgacggccgacgtctgcggctgtcgaacctcgac
aaggtgctgtaccccagaacgggcaccaccaagggcgaggtgatcgactacttctcgcgc
atcgcgcccctgatgctcccccacctcgaccggcgcccggtgacgcgcaaacgctggccc
gagggcgtcgaacagcccgatttcttcgcgaaagccctcgagcccggcgctccctcatgg
ctcccccgcatgccgatcgaccattccagcggatcgaaggactaccccctcgtcgaagag
gtggcctcgctcgtctacctcgcgcaggtcgcgagcctcgaactgcacgtcccgcagtgg
cgcttcaccgacgccggcgagcgcggctctcccgaccggctcgtcctcgacctcgatccg
ggccccggtgtcgggctggccgagtgcgccgaggtggcgcggtgggtgcgcagcatcctc
tcggacatgggaatggagttgtttcccgtcacgagcggaagcaagggcatccatctgtac
gctccgctcgccggcgcgaagacgagcgatcaggcctcggcgttcgcgaaagagctcgcc
cgcgctctcgaggccgatcaccccgacctcgtcatcagtcagatgacccggagcgcccgc
accggcaaggtcttcctcgactggagccagaacaacggttcgaagaccaccatcgcgccc
tattcgctgcgcggccgcgatgagccgaccgtcgctgcaccgcgaacgtgggacgagctc
gacgatccggacctccgccacctccgcttcgacgagatgctcgagcgcgcagacgaagtc
ggcgacctgctcgcggcgctcgcaccccggcgaacggcaccgctggcgccgtacctcgcg
aagcggtccgcggaccgcacgcccgagcccatgcccgatgccgtgtcgggtgcggcggcg
ggcgttgcgggtaccgcaccagcgggcaagccccgcttcgtcgtgcaggagcaccatgcc
cggcggctgcactacgacctgcgcctggagcgggacggagtgctggtcagctgggccgtg
ccccgcggcatccccgagacgaccgaccgcaaccatctcgccgtgatgaccgagccgcat
ccgctggagtatctgaccttccacggcgagatccccgccggtgagtacggtgcgggcacc
atgacgatctgggacaccggcgtctacgacctcgagaagtggcgcgaggacgagatcatc
ttcaccctccggggcaccaccggcggaaccgcgcacgacgcgcgcctcgtgctcatccgc
accggcgggtcgggcgagaagtcgcagtggctcctgcaccggatgaagaccgaggctccg
gggtcggccccctccgcacccgcggggtctgcgcggccggcggcatccgcgcggccgccg
gcatctgctcattccgacgccgagacgggcgcatcgacgatcgcggcgggaccggtgtcg
cccatgctggccgtctcatcgtcgcgcggagccgcccgcgcgacggcggaacgctggggg
ccgtgggtcgagttcaagtgggatggcgtccgggcgatcgcgtactgggacggcgagcga
atgcggttgcacgcccgcagcggcaccgacatcacggcccgctaccccgagctcacgggc
gaggacgcggatctgggactcggcgagacccccctggtgctcgacggcgagatcgtcgcg
ctcgacggggcgggacgcccgagcttcccgctcctgcagaaccggatgcacctcacgaag
gcccgcgacatcgcgcgggagcgcgaccgcacgcccgccgatctcttcgtgtttgacatg
ctgcggcacggcgaccgcgacgtcacgaccctgccgttgcgcgagcgccgacgactgctc
gagtccgcgacggcgcacgcaaaaccgccgctcacggtgccgcccgtcaccgacgacctc
gacgccgcgctgaccgtggctcgggagctcgatctcgagggtgccgtcgtgaaggacccg
tcatcccgttaccgccccggcgctcgatcggaggaatggctcaaggtcaagctcacccgc
acgcaggacgtcgtcgtcggcgcgatccggccgggcaagggcgagcggcgcgggggcatc
gggtcgctgctgctcggcattcccgacgacgacggcgctctgcactacgccgggcgcgtc
ggatccgggttctccgatgccgaactcgcgcggctgaccgccgccctcgagcctctccgc
tcgaaagagaacccgttcgtgggcatccccgcagccgacgcctccgacgcccggtgggtt
cgacccgagctcgtcggcgaggtcgagttcgccgagttcacgccgggcggcatcctgcgc
cacgctcgctggcggggcctgcggccggaccggacccccggcggcgtccgccgagaagag
agctag
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