Microbacterium paraoxydans: IZR02_11285
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Entry
IZR02_11285 CDS
T08796
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mpao
Microbacterium paraoxydans
Pathway
mpao03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mpao00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
IZR02_11285 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mpao03400
]
IZR02_11285 (ligD)
Enzymes [BR:
mpao01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
IZR02_11285 (ligD)
DNA repair and recombination proteins [BR:
mpao03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
IZR02_11285 (ligD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
DNA_ligase_OB_2
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QXE28970
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All DBs
Position
2313301..2315280
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AA seq
659 aa
AA seq
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MVGEAQVVQVDGRRLRVTNLDKVVYPETGTTKGEVIAYYTAIAPLLLPLLDGRPVTRKRW
VEGVGTAAAPEDSFFTKQLEPGAPDWIPRQDIQHSDGPKAYPLVEDVPTLVWLAQVAAIE
LHVPQWRFTPEGLPGRPDRLVLDLDPGPGADLAQCAEVARIARTLLTGMGLDPLPVTSGS
KGIHLYASLPGEQTSAEVSAVVKELARIIENDHPDLATSVMSKAVRGGKVFLDWSQNNGK
KTTISPYSLRGRARPGVAAPRTWEELDDPGLAHLELDDVLARAAAGFDPLSSLRPDAPAL
PSNAPASTPAPAIRAAAPAPTRRGRPLAAPAPSPAGATLPSLAPMLAENGTPAIARNLST
PSWVEVKWDGIRAIGTWRDGHMSLHARRGTDITARYPELTADGAPFLPVDEAIVDGEIVA
FDSAARPSFSLLQNRMHLTRPREIEREVVRTPVVYMLFDLLRLDGHDLTGMPLRERRTLL
GDIVAGVDAPIQVPPVFDDVDAALAASEEFGLEGVVVKDPASRYRAGQRSPSWLKLKNTR
MQEAVIVGIRPGKGEREGTLGSLLLAVPEGGDLRYIGRVGTGFTDRILRDLLARLEPLRV
PRAPLDRVPRPDASDALWVRPELVGEVEFANWTPDGILRHARWRGLRPDKTVDEITVEA
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
atggtgggagaggcgcaggtcgtgcaggtcgacggccgacgactgcgcgtgaccaacctc
gacaaggtcgtctatccggagacgggcacgaccaagggcgaggtcatcgcctactacacc
gccatcgcgcccctgctcctgcccctcctcgacggccgcccggtcacccgcaagcgctgg
gtcgagggggtcggcaccgccgccgccccggaagactccttcttcacgaagcagctcgag
cccggggctccggactggatcccgcggcaggacatccagcactccgacggtcccaaggcg
tatccgctggtggaggacgtgcccacgctcgtgtggctcgcgcaggtcgccgcgatcgag
ctgcacgtgccgcagtggcgcttcactcccgagggcctgcctggccgccccgaccgcctc
gtcctcgacctcgaccccggtcccggcgccgacctcgctcagtgcgccgaggtcgcccgg
atcgccaggacgctcctcaccggcatgggcctcgaccccctgcccgtgacgagcggcagc
aagggcatccacctctacgcgtccctgcccggcgagcagaccagcgccgaggtctccgcc
gtggtcaaagaactggcccgcatcatcgagaacgaccacccggacctggcgacgagcgtc
atgtccaaggccgtgcgcgggggcaaggtgttcctcgactggagccagaacaacggcaag
aagacgacgatctccccgtactccctgcgcgggcgcgcccgccccggcgtcgcggcgccg
cgcacgtgggaggagctcgacgacccggggctcgcacacctcgaactggacgacgtgctc
gcacgcgcggctgcgggattcgaccccctctcgtcgctccgccccgacgctccggcactg
ccctcgaacgcgcccgcctcgaccccggctcccgcgatccgggcggcggcccccgccccc
acccgccgcggacggcccctcgccgcgcccgcaccgtcacccgccggggccaccctcccc
tccctcgccccgatgctcgccgagaacggcacccccgcgatcgctcgaaacctcagcacc
ccgtcctgggtggaggtgaagtgggacggcatccgtgcgatcggcacctggcgcgacggg
cacatgtcgctgcacgcccgtcgcggcaccgacatcaccgcccgctaccccgagctgacg
gccgacggcgccccgttcctcccggtcgacgaggcgatcgtcgacggggagatcgtcgcc
ttcgacagcgccgcccggccgagcttctccctgctgcagaaccgcatgcacctcacccgg
ccccgggagatcgagcgtgaggtggtgcgcacaccggtcgtgtacatgctgttcgacctg
ctccgtctcgacggccacgacctcaccgggatgccgctccgcgagcgccgcacgctcctg
ggtgacatcgtggcgggagtcgacgcgcccatccaggtcccacccgtcttcgacgacgtg
gacgcggcactggcggcgagcgaggagttcggtctggagggcgtcgtcgtgaaggatccg
gcgtcgcggtaccgcgccggccagcgctcgccctcctggctcaagctcaagaacacccgc
atgcaggaggcggtgatcgtcggtatccgcccgggaaagggcgagcgggagggcactctc
ggctctctcctcctcgcggtcccggagggcggcgacctccgctacatcggccgcgtgggc
accggattcaccgaccggatcctccgcgatctcctcgcccgcctggaaccgctgcgcgtg
ccgcgcgcaccgctcgacagagtcccccgacccgatgcctccgacgccctgtgggtgcgc
cccgagctcgtgggcgaggtggagttcgcgaactggacgccggacggcatcctccggcac
gcgcgttggcgaggtctgcgcccggacaagaccgtcgacgagatcaccgtcgaggcgtga
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