Mycolicibacterium phlei: MPHLCCUG_01253
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Entry
MPHLCCUG_01253 CDS
T04305
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mphl
Mycolicibacterium phlei
Pathway
mphl03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mphl00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MPHLCCUG_01253 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mphl03021
]
MPHLCCUG_01253 (rpoC)
03400 DNA repair and recombination proteins [BR:
mphl03400
]
MPHLCCUG_01253 (rpoC)
Enzymes [BR:
mphl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MPHLCCUG_01253 (rpoC)
Transcription machinery [BR:
mphl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MPHLCCUG_01253 (rpoC)
DNA repair and recombination proteins [BR:
mphl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MPHLCCUG_01253 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
TarH
Motif
Other DBs
NCBI-ProteinID:
AMO60079
LinkDB
All DBs
Position
1293845..1297792
Genome browser
AA seq
1315 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYVITSVNDEMRHNELSTLEAEMAVERKAIEDQRDLDLAERAKKLEDD
LAELEKEGAKSDVRRKVRDGGEREMRQIRDRAQRELDRLDEIWNTFTKLAPKQLIVDEVL
YRELQDRYGEYFEGAMGAEAIKKLIENFDIDAEAEQLREIIRNGKGQKKLRALKRLKVVA
AFQNSSNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTMVEGDKGEYK
PASKEGPEQGVYSSPAEAIMAMDRGALSVRAKIKVRLTQLRPPADIEAELFPEGWKPGDA
WTAETTLGRVMFNELLPHGYPFVNEQMHKKVQARIVNDLAERYPMIVVAQTVDKLKDAGF
YWATRSGVTVSMADVLVPPQKKEILDRYEREADAIEKKYQRGALNHDERNDALVKIWQDA
TEEVGEALRAHYPKDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPIKSSFR
EGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCETERGILVTL
AEKQPDGTLVRDAHIETSAYARTLAQDAVDTDGNVIVERGRDLGDPQIEALLSAGITEVK
VRSVLTCATGTGVCAMCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGVG
EDITGGLPRVQELFEARIPRNKAPIADVSGRVQLEEGDRFYKITIIPDDGGEPVVYDKLS
RRQRLKVFKHDDGTERLLADGDHVEVGQQLMEGAADPHEVLRVQGPREVQIHLVKEVQEV
YRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLTERAEFEAENRRVVAEGGEPA
AGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLQGLKENVIIGKLIPAG
TGINRYRNIQVQPTEEARAAAYTIPSYEDQYYSPDFGQSTGAAVPLDDYGYSDYR
NT seq
3948 nt
NT seq
+upstream
nt +downstream
nt
gtgctagacgtcaacttcttcgatgagctccggatcggcctggccaccgcagacgacatc
cgtcagtggtcctacggcgaggtcaagaagcccgagaccatcaactaccgcacgctcaag
cctgagaaggacggcctgttctgcgagaagatcttcggaccgactcgcgactgggagtgc
tactgcggtaagtacaagcgcgtccgcttcaagggcatcatctgcgagcgctgcggcgtc
gaggtgacccgcgccaaggtgcgccgtgagcggatgggccacatcgagctggccgccccc
gtcacgcacatctggtacttcaagggtgtgccctcgcggctcgggtacctgctcgacctg
gcgccgaaggatctcgagaagatcatctacttcgccgcgtacgtcatcacgtcggtcaac
gacgagatgcgccacaacgagctctcgacgctggaggccgagatggccgtcgagcgcaag
gcgatcgaggaccagcgtgacctcgacctggccgagcgcgcgaagaagctcgaggacgac
ctggccgagctggagaaggaaggcgccaagagcgacgtgcgccgcaaggtgcgcgacggc
ggcgagcgtgagatgcgccagatccgcgaccgggcccagcgtgagctggaccggctcgac
gagatctggaacaccttcaccaagctggcgcccaagcagctcatcgtcgacgaggtgctc
taccgcgagctgcaggaccgctacggcgagtacttcgagggcgccatgggtgccgaggcg
atcaagaagctcatcgagaacttcgacatcgacgccgaggccgagcagctgcgcgagatc
atccgcaacggcaaggggcagaagaagcttcgcgccctcaagcgcctgaaggtggtcgcc
gcgttccagaactcgagcaactcgccgatgggcatggtgctcgacgcggtgccggtgatc
ccgccggagctgcgcccgatggtccagctcgacggtggccgcttcgccacctccgacctg
aacgacctgtaccgccgcgtcatcaaccgcaacaaccgcctgaagcgactgatcgacctc
ggcgcgcccgagatcatcgtcaacaacgagaagcgcatgcttcaggagtcggtggacgcg
ctgttcgacaacggccgccgcggccgcccggtcaccgggccgggcaaccgtccgctgaag
tcgctgtcggatctgctcaagggcaagcagggccggttccgccagaacctgctcggtaag
cgcgtcgactactcgggccgttcggtcatcgtggtcggcccgcagctcaagctgcaccag
tgcggtctgcccaagctgatggcgctggagctgttcaagccgttcgtgatgaagcgtctg
gtcgacctgaaccacgcgcagaacatcaagagcgcaaagcgcatggtggagcggcagcgg
ccgcaggtgtgggacgtcctcgaagaggtcatcgccgagcacccggtgctgctgaaccgc
gcacccacgctgcaccgcctcggtatccaggccttcgagccgcagctggtggagggcaag
gccattcagctgcacccgctggtctgcgaggcgttcaacgccgacttcgacggtgaccag
atggccgtgcaccttccgctgtcggcggaggcgcaggccgaggcgcgcatcctgatgctg
tcgtcgaacaacatcctgtcgcccgcgtcgggccgcccgctggccatgccgcgtctggac
atggtgaccggcctgtactacctgaccacgatggtcgagggcgacaagggcgagtacaag
cccgcgtcgaaggagggtccggagcagggcgtgtacagcagcccggccgaggccatcatg
gcgatggaccgcggtgcgctgagcgtgcgggccaagatcaaggtgcggttgacgcagctg
cgtccgccggccgacatcgaggccgagctgttcccggagggctggaagccgggcgacgcc
tggaccgcggagaccacgctgggccgggtcatgttcaacgagcttctgccgcacgggtat
ccgttcgtcaacgagcagatgcacaagaaggtccaggcccggatcgtcaacgacctggcc
gagcgctacccgatgatcgtggtggcgcagaccgtcgacaagctcaaggacgccggcttc
tactgggccacccgttcgggtgtcaccgtgtcgatggccgacgtgctcgtgccgccgcag
aagaaggagatcctcgaccgctacgagcgtgaagccgacgcgatcgagaagaagtaccag
cgcggtgctctcaaccacgacgagcgcaacgacgccctggtcaagatctggcaggacgcc
accgaagaggtcggtgaggcgctgcgggcgcactacccgaaggacaacccgatcatcacg
atcgtggactcgggtgcgacgggtaacttcacccagacccgaacgctggccggcatgaag
ggtctggtgaccaacccgaagggtgagttcatcccgcgtccgatcaagtcctcgttccgc
gagggcctgacggtgctggagtacttcatcaacacccacggcgcccgtaagggtctggcg
gacaccgctcttcgtaccgccgactcgggttacctgacccgtcgtctggtggacgtctcg
caggacgtcatcgtgcgcgagcacgactgcgagaccgagcgcggcatcctggtcaccctg
gccgagaagcagcccgacggcacgctggtgcgcgacgcgcacatcgagacctcggcgtac
gcgcgcaccctggcgcaggacgcggtcgacacggacggcaacgtcatcgtcgagcgtggc
cgcgacctgggcgacccgcagatcgaggcgctgctgtcggccggtatcaccgaggtgaag
gtccgctccgtgctgacctgcgccaccggcaccggcgtctgcgcgatgtgctacggccgc
tcgatggccaccggcaagctcgtcgacatcggcgaggccgtcggcatcgtcgccgcccag
tccatcggtgagcccggtacccagctgaccatgcgtacgttccaccagggtggcgtcggt
gaggacatcaccggtggtctgccgcgcgtgcaggagctgttcgaggcccgcatcccgcgg
aacaaggccccgatcgccgacgtgtccggccgcgtgcagctggaggagggcgaccggttc
tacaagatcaccatcatcccggatgacggtggcgaaccggtggtctacgacaagctgtct
cgtcgtcagcgcctgaaggtgttcaagcacgacgacggcaccgagcgcctgctcgccgac
ggcgaccacgtcgaggtgggccagcagctgatggaaggtgcggccgacccgcacgaggtg
ctgcgtgtccagggcccgcgcgaggtgcagatccacctcgtcaaggaggtccaggaggtc
taccgggcccagggcgtgtcgatccacgacaagcacatcgaggtcatcgtccggcagatg
ctgcgtcgcgtcacgatcatcgactcgggctcgacggagttcctgcccggctcgctgacc
gagcgcgcggagttcgaggcggagaaccgtcgggtcgtcgccgagggcggcgagcccgcg
gccggccgtccggtgctgatgggtatcacgaaggcgtcgctggccaccgactcgtggctg
tcggcggcgtcgttccaggagaccactcgcgtgctgaccgatgcggcgatcaactgccgc
agcgacaagctgcagggtctgaaggagaacgtgatcatcggcaagctgatcccggccggt
accggcatcaaccgctaccgcaacatccaggtgcagccgaccgaggaggcccgggccgcc
gcgtacacgatcccgtcctacgaggatcagtactacagcccggacttcggccagtcgacc
ggcgccgcggtgccgctggacgactacggctactccgattaccggtag
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