Methylophaga pinxianii: LGT42_005560
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Entry
LGT42_005560 CDS
T08312
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mpin
Methylophaga pinxianii
Pathway
mpin03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mpin00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
LGT42_005560 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mpin03400
]
LGT42_005560 (ligD)
Enzymes [BR:
mpin01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
LGT42_005560 (ligD)
DNA repair and recombination proteins [BR:
mpin03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
LGT42_005560 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_primase_S
Importin_rep_2
Motif
Other DBs
NCBI-ProteinID:
UPH46751
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All DBs
Position
1142958..1145429
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AA seq
823 aa
AA seq
DB search
MVHNALKKYNDKRNFGITEEPPGKLSKKRKSGLIFTVQKHDATRQHYDFRLEWQGVLLSW
AVPKGPSYCPKDKRLAVRTEDHPLSYHDFEGVIPAKQYGAGPVMLWDTGVWEPLDKDPEK
ALSQGKITFRLTGKKLNGEWTLARMNDKQKGRENWLLIKRNDDTAIAQPDTKFLEKTDFS
VKSGRDFAEIAANISTPVSAPVTNTPNLATLQKKYHSPQLATLVDNPPTGDNWVHEVKYD
GYRILVFFRNGEVRILTRNGHDWTDKFPLIAQAFQKLETGTFVLDGEVVVLNEKGVSDFK
ALQEALTTKDVPMQGYFFDLLYWSGEDYSKKILSQRRKALEQLFKEFPAGPLYLSEIIEG
DAKEIISKACDLNLEGIISKKADAKYSQTRNKYWLKSKCQQRQEFIICGFEPASSSDKAI
GSLHLGFYQQKKLLYAGKVGTGFSHQMAFDLYQKLQPLQINKPAFDQRPGGSFKSTHWVK
PELLCEVEFATWTRSGKVRHASFQGLRADKQPKQIIKEQAISTAERSRKDQADKVAGVVI
SNADRQIFPQAQISKGELASFYEALSDEIMPWLKNRPLSVVRCPGGIDHQCFFQRSKGKG
MPKHIHTITISHNDKSHEYIYLKQLMGLIELVQMGSIEMHPWGAKIDNIEKPDKIVFDLD
PDEDIPFEAVKLAAQDVRHRLDDLGLESFVKCTGGKGLHVTVPIQRRQEWDTVKTFARNF
AQQMVKAVPLAYTINMAKKQRKGKIFIDYLRNDFASTAVMDYCVRARPGAPVAVPLHWEE
LDSLDSAHQFSIEDVLQRQAASKLFVYPAIRQGLTQQMLMEVE
NT seq
2472 nt
NT seq
+upstream
nt +downstream
nt
atggtccacaatgctttaaaaaaatacaacgacaaacgaaatttcggaattaccgaagag
ccaccgggaaaactcagtaaaaagcgtaaatccggactaatctttacggtgcagaaacat
gatgcaacgcgtcagcattatgatttccggcttgaatggcaaggcgtactgctcagttgg
gcggttcccaaaggtcccagttattgtcccaaagataaaaggcttgctgttcgtactgaa
gaccatccgctttcgtatcatgatttcgagggagtgatacccgccaagcaatatggtgct
ggacctgtgatgctttgggatactggagtatgggaaccacttgataaggatccggaaaaa
gcgttgtcacaagggaaaatcacctttcgtttaacaggtaagaaattaaacggtgaatgg
acgctggcacggatgaatgacaaacagaaggggcgggaaaactggctgctgatcaagcgt
aatgatgacactgcgatagctcagccagatacgaaatttttagaaaaaacagattttagt
gttaagtcagggcgtgattttgcagaaattgcggccaatatatccactcctgtttctgct
ccggtaaccaacacgccgaatttagcaactttacaaaaaaaatatcattcaccccagttg
gccactctggtagacaatcctcctactggagataactgggttcatgaagtgaaatacgat
ggctatcgtattctggtgtttttccgaaacggagaggttcgcatcctgacccgtaatggt
catgattggacagataagtttccactgatcgcgcaggcttttcaaaaacttgaaaccggt
acatttgttctggacggggaagtggtggtacttaatgaaaaaggggtgagtgattttaaa
gcattgcaggaagcactgacgaccaaagatgttccgatgcaaggatatttttttgatttg
ctctattggagtggcgaggattacagcaaaaaaatattatcccagcgtcgcaaggctctg
gagcagttgtttaaggaattcccggcaggtcctttgtatctaagtgagataattgagggc
gatgctaaagagatcatcagtaaagcctgtgatttgaatctggaaggtattatttccaaa
aaagctgatgccaaatacagtcaaacgcgaaataaatattggctgaaaagtaaatgtcag
cagcgacaggagtttattatctgtggctttgaaccagccagttccagtgataaagctatt
ggttcgctgcacctgggtttctaccaacaaaaaaaactgctttatgccggaaaagtaggc
accggtttcagtcatcaaatggcttttgatttatatcaaaagttacagccattacaaata
aacaaaccggcatttgatcaacgaccaggtggcagtttcaaatctactcattgggtaaaa
ccagaattattatgtgaagtggaatttgctacctggaccagaagcggtaaggtgcgccat
gcgtcatttcagggattacgtgcagataagcagcctaagcaaattattaaagaacaagct
atcagcacagctgaacgatccaggaaagatcaggctgataaagttgccggagtcgttatc
agtaatgctgacagacagatctttcctcaggctcaaatcagtaaaggtgaattagcgtca
ttttatgaggcgcttagtgatgagattatgccatggttgaaaaaccggcctttaagtgtg
gtgcgttgcccgggaggtattgatcatcaatgctttttccagcgttccaaaggcaagggc
atgccaaagcatatccataccataaccatcagccataatgacaaatcgcacgagtatatt
tatttgaaacaactgatgggtttgattgagctggtgcagatgggcagcattgagatgcat
ccatggggcgctaaaatcgataacatcgaaaagccggataagattgtgtttgatctggat
cccgatgaggacattccctttgaagcagtaaaattagctgcacaggatgttaggcatcgt
ctcgatgatttggggcttgaatcctttgttaaatgtactggcggtaaaggcctgcacgtt
actgtgcccattcaacgtcgacaagaatgggatacggttaagacgtttgcccggaatttc
gcccagcaaatggttaaggcggtccccctggcttatacgattaatatggcaaaaaaacag
cgtaagggaaaaatctttattgattatttacgcaatgattttgcttcaacagccgtaatg
gattattgcgtccgtgcacgaccgggggcgccagttgcggtaccgcttcattgggaagag
ctggattcgctggattctgcccaccagttttcaatagaggatgttctgcagcggcaagca
gccagtaagctgtttgtttatcctgctattcgtcagggtcttacacagcaaatgttaatg
gaagtggaatga
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