KEGG   Methylophaga pinxianii: LGT42_005560
Entry
LGT42_005560      CDS       T08312                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
mpin  Methylophaga pinxianii
Pathway
mpin03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:mpin00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    LGT42_005560 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:mpin03400]
    LGT42_005560 (ligD)
Enzymes [BR:mpin01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     LGT42_005560 (ligD)
DNA repair and recombination proteins [BR:mpin03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     LGT42_005560 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C RNA_ligase DNA_primase_S Importin_rep_2
Other DBs
NCBI-ProteinID: UPH46751
LinkDB
Position
1142958..1145429
AA seq 823 aa
MVHNALKKYNDKRNFGITEEPPGKLSKKRKSGLIFTVQKHDATRQHYDFRLEWQGVLLSW
AVPKGPSYCPKDKRLAVRTEDHPLSYHDFEGVIPAKQYGAGPVMLWDTGVWEPLDKDPEK
ALSQGKITFRLTGKKLNGEWTLARMNDKQKGRENWLLIKRNDDTAIAQPDTKFLEKTDFS
VKSGRDFAEIAANISTPVSAPVTNTPNLATLQKKYHSPQLATLVDNPPTGDNWVHEVKYD
GYRILVFFRNGEVRILTRNGHDWTDKFPLIAQAFQKLETGTFVLDGEVVVLNEKGVSDFK
ALQEALTTKDVPMQGYFFDLLYWSGEDYSKKILSQRRKALEQLFKEFPAGPLYLSEIIEG
DAKEIISKACDLNLEGIISKKADAKYSQTRNKYWLKSKCQQRQEFIICGFEPASSSDKAI
GSLHLGFYQQKKLLYAGKVGTGFSHQMAFDLYQKLQPLQINKPAFDQRPGGSFKSTHWVK
PELLCEVEFATWTRSGKVRHASFQGLRADKQPKQIIKEQAISTAERSRKDQADKVAGVVI
SNADRQIFPQAQISKGELASFYEALSDEIMPWLKNRPLSVVRCPGGIDHQCFFQRSKGKG
MPKHIHTITISHNDKSHEYIYLKQLMGLIELVQMGSIEMHPWGAKIDNIEKPDKIVFDLD
PDEDIPFEAVKLAAQDVRHRLDDLGLESFVKCTGGKGLHVTVPIQRRQEWDTVKTFARNF
AQQMVKAVPLAYTINMAKKQRKGKIFIDYLRNDFASTAVMDYCVRARPGAPVAVPLHWEE
LDSLDSAHQFSIEDVLQRQAASKLFVYPAIRQGLTQQMLMEVE
NT seq 2472 nt   +upstreamnt  +downstreamnt
atggtccacaatgctttaaaaaaatacaacgacaaacgaaatttcggaattaccgaagag
ccaccgggaaaactcagtaaaaagcgtaaatccggactaatctttacggtgcagaaacat
gatgcaacgcgtcagcattatgatttccggcttgaatggcaaggcgtactgctcagttgg
gcggttcccaaaggtcccagttattgtcccaaagataaaaggcttgctgttcgtactgaa
gaccatccgctttcgtatcatgatttcgagggagtgatacccgccaagcaatatggtgct
ggacctgtgatgctttgggatactggagtatgggaaccacttgataaggatccggaaaaa
gcgttgtcacaagggaaaatcacctttcgtttaacaggtaagaaattaaacggtgaatgg
acgctggcacggatgaatgacaaacagaaggggcgggaaaactggctgctgatcaagcgt
aatgatgacactgcgatagctcagccagatacgaaatttttagaaaaaacagattttagt
gttaagtcagggcgtgattttgcagaaattgcggccaatatatccactcctgtttctgct
ccggtaaccaacacgccgaatttagcaactttacaaaaaaaatatcattcaccccagttg
gccactctggtagacaatcctcctactggagataactgggttcatgaagtgaaatacgat
ggctatcgtattctggtgtttttccgaaacggagaggttcgcatcctgacccgtaatggt
catgattggacagataagtttccactgatcgcgcaggcttttcaaaaacttgaaaccggt
acatttgttctggacggggaagtggtggtacttaatgaaaaaggggtgagtgattttaaa
gcattgcaggaagcactgacgaccaaagatgttccgatgcaaggatatttttttgatttg
ctctattggagtggcgaggattacagcaaaaaaatattatcccagcgtcgcaaggctctg
gagcagttgtttaaggaattcccggcaggtcctttgtatctaagtgagataattgagggc
gatgctaaagagatcatcagtaaagcctgtgatttgaatctggaaggtattatttccaaa
aaagctgatgccaaatacagtcaaacgcgaaataaatattggctgaaaagtaaatgtcag
cagcgacaggagtttattatctgtggctttgaaccagccagttccagtgataaagctatt
ggttcgctgcacctgggtttctaccaacaaaaaaaactgctttatgccggaaaagtaggc
accggtttcagtcatcaaatggcttttgatttatatcaaaagttacagccattacaaata
aacaaaccggcatttgatcaacgaccaggtggcagtttcaaatctactcattgggtaaaa
ccagaattattatgtgaagtggaatttgctacctggaccagaagcggtaaggtgcgccat
gcgtcatttcagggattacgtgcagataagcagcctaagcaaattattaaagaacaagct
atcagcacagctgaacgatccaggaaagatcaggctgataaagttgccggagtcgttatc
agtaatgctgacagacagatctttcctcaggctcaaatcagtaaaggtgaattagcgtca
ttttatgaggcgcttagtgatgagattatgccatggttgaaaaaccggcctttaagtgtg
gtgcgttgcccgggaggtattgatcatcaatgctttttccagcgttccaaaggcaagggc
atgccaaagcatatccataccataaccatcagccataatgacaaatcgcacgagtatatt
tatttgaaacaactgatgggtttgattgagctggtgcagatgggcagcattgagatgcat
ccatggggcgctaaaatcgataacatcgaaaagccggataagattgtgtttgatctggat
cccgatgaggacattccctttgaagcagtaaaattagctgcacaggatgttaggcatcgt
ctcgatgatttggggcttgaatcctttgttaaatgtactggcggtaaaggcctgcacgtt
actgtgcccattcaacgtcgacaagaatgggatacggttaagacgtttgcccggaatttc
gcccagcaaatggttaaggcggtccccctggcttatacgattaatatggcaaaaaaacag
cgtaagggaaaaatctttattgattatttacgcaatgattttgcttcaacagccgtaatg
gattattgcgtccgtgcacgaccgggggcgccagttgcggtaccgcttcattgggaagag
ctggattcgctggattctgcccaccagttttcaatagaggatgttctgcagcggcaagca
gccagtaagctgtttgtttatcctgctattcgtcagggtcttacacagcaaatgttaatg
gaagtggaatga

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