Microcystis panniformis: VL20_6420
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Entry
VL20_6420 CDS
T04037
Name
(GenBank) DNA-directed RNA polymerase beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
mpk
Microcystis panniformis
Pathway
mpk03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mpk00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
VL20_6420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mpk03021
]
VL20_6420
03400 DNA repair and recombination proteins [BR:
mpk03400
]
VL20_6420
Enzymes [BR:
mpk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
VL20_6420
Transcription machinery [BR:
mpk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
VL20_6420
DNA repair and recombination proteins [BR:
mpk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
VL20_6420
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
AKV71154
UniProt:
A0A0K1SAM3
LinkDB
All DBs
Position
5613171..5616482
Genome browser
AA seq
1103 aa
AA seq
DB search
MNNLTFNLLPDLIEIQHSSFRWFLEEGLIEELNSFSPISDYTGKLELHFLGQDYRLKEPK
YNVDEAKRRDSTYSVQMYVPTRLINKETGENIEQEVFIGDLPLMTERGTFIINGAERVIV
NQIVRSPGVYYKAEIDKNGRRTYSASLIPNRGAWLKFETDKNGLVWVRIDKTRKLSAQVL
LKAIGLSDNEIFDSLRHPEFYQKTLDKEGNPTEEEALLDLYRKLRPGEPPTVTGGQQLLE
SRFFDNKRYDLGRVGRYKLNKKLRLNVPDNQRVLTTTDILSAIDYLINLEFDIGNTDDID
HLGNRRVRSVGELLQNQVRVGLNRLERIIRERMTVSESQNLTPASLVNPKPLVAAIKEFF
GSSQLSQFMDQTNPLAELTHKRRISALGPGGLTRERAGFAVRDIHPSHHGRICPVETPEG
PNAGLIGSLATYARVNDYGFIETPCYAVENGRVRYDLPVKYLTADEEDDLRVAPGDVATD
ENGYILGETIPVRYRQEFSTTSPEQVDYVCVSPVQIVSVATSLIPFLEHDDANRALMGSN
MQRQAVPLLRPERPLVGTGLEAQAARDSGMVIVSRTNGVVSYVDANRIRIKVADEDKEIF
GKSEIEYEIQKYQRSNQDTCLNQRPLVYQGEQVVPGQILADGSATEGGEIALGQNILVAY
MPWEGYNYEDAILISERLVAQDTYTSIHIEKYEIEARQTKLGPEEITREIPNVGEDALRN
LDERGIIRIGAWVEASDILVGKVTPKGESDQPPEEKLLRAIFGEKARDVRDNSLRVPNGE
KGRVVDVRVFTREQGDELPPGANMVVRVYVAQKRKIQVGDKMAGRHGNKGIISRILPLED
MPYLPDGRPVDIVLNPLGVPSRMNVGQVFECLLGWAGENLGVRFKITPFDEMYGEEASRL
TVHGLLENASKKPNRDWVFKEEHAGKVTVYDGRTGEPFDRPVTVGMAYMLKLVHLVDDKI
HARSTGPYSLVTQQPLGGKAQQGGQRFGEMEVWALEAYGAAYTLQELLTVKSDDMQGRNE
ALNAIVKGKPIPRPGTPESFKVLMRELQSLGLDIAVHKVENAPDGTSRDVEVDLMVDVGR
RAPSRPTYESLTTEDFEEEESEV
NT seq
3312 nt
NT seq
+upstream
nt +downstream
nt
atgaacaatcttacctttaatctcttacccgacctcatcgaaatccaacactccagtttt
cggtggtttttggaagaaggactaatcgaggaactgaatagcttttcccccatcagcgac
tatacaggtaaattagaactacatttcctcggccaggactacagactcaaagaaccgaaa
tacaacgtcgatgaagccaaacgacgcgatagcacctattccgttcagatgtacgttccc
acccgtctaatcaacaaagaaacgggagaaaacatcgaacaggaagtctttatcggcgat
ttacccctgatgaccgaacggggaacctttatcattaacggggctgaacgagtcatcgtc
aatcagatcgtccgttctcccggtgtttactacaaggccgaaatcgacaaaaatggtcgc
cgtacctactccgcttccctgattcccaaccgaggagcttggttaaaatttgaaaccgac
aaaaacggcttagtctgggtcagaatcgacaaaacccgcaaattatccgcccaagttctc
ctgaaagcgatcggattgagcgataacgaaatctttgactccctacgccatcccgaattc
taccaaaaaaccctcgacaaagaaggcaatcccaccgaagaagaggccctgctcgacctg
taccgcaaactacgccccggggaaccccccaccgtcactggcggacaacaactgctcgaa
tcgcgcttttttgacaataaacgctacgatctcggtcgcgttggtcgttataaactcaac
aaaaaactacgcctcaacgtccccgataaccagcgcgttctcaccaccaccgacatctta
tcggcgatcgactacctaattaacctcgaatttgacatcggcaacaccgacgacatcgac
cacctcggcaaccgtcgcgtccgttccgtgggtgaactgctccaaaaccaagtgcgagta
ggtttaaaccgcttagaaagaatcattcgggaacggatgaccgtcagcgaatcccaaaac
ctcacccccgcttccctagtcaacccgaaacccctagtagcggcgattaaagaattcttt
ggttcctcgcaactctcccagttcatggatcaaaccaaccccctagcggaattgacccat
aaacgccgcatttccgcccttggccctggcggtctcacccgggaacgggccggttttgcc
gtgcgcgacattcacccctcccaccacggccgcatttgtccggtggaaaccccagaaggt
cccaacgccggcttaatcggttccctggccacctacgcccgcgtcaacgactacggtttt
attgaaaccccctgttacgcggtggaaaatggccgagttcgctacgatctccccgttaaa
tacctcaccgccgacgaagaagacgatctcagagtcgcaccgggagacgtggccaccgat
gaaaatggttatatcctcggcgaaactatcccagtgcgctatcggcaggaattctccacc
acctcccccgaacaagtggactacgtttgtgtttcccccgtccaaattgtctcggtggcc
acttccctgattcccttccttgaacacgacgacgctaaccgcgccctcatgggttctaat
atgcagcgacaagcggttcccctgctgcgtcccgaacgtccccttgtgggtaccggattg
gaagcacaggccgctcgcgactctggtatggtcatcgtttcccgtaccaatggggtcgtt
tcctacgtcgatgctaaccggattcgcatcaaagtggcggatgaagacaaagagattttc
ggtaagagcgagatagagtacgaaattcagaaatatcaacgctctaaccaagatacctgc
ctaaatcagcgtcctttagtctatcaaggggaacaagttgtgccagggcagatcctcgcc
gatggttccgccaccgaaggaggagaaatcgccctcggccagaatatcctcgtcgcctat
atgccctgggaaggctataactacgaagacgcgattttaatcagcgaaagactggtggca
caagacacctacaccagtatccacattgaaaaatacgaaatcgaagctcgtcaaactaaa
ctcggacctgaggaaatcaccagggaaattcccaacgtcggtgaagatgccctgcgaaac
ctcgatgaacgaggcattattcgcatcggggcctgggtagaagccagcgatatcctcgtg
gggaaagtcaccccgaaaggcgaatcagaccaaccccccgaagaaaaactactgcgggca
attttcggcgaaaaggcccgggatgtacgggataactccctgcgcgtccccaacggcgaa
aaaggccgggtagtggatgtgcgggtatttacccgcgaacagggagatgaattacccccc
ggggccaatatggtggtacgggtttacgttgcccaaaaacgcaaaatccaagtgggcgat
aaaatggcgggtcgtcacggcaataaagggattatttctcggattctgcccctagaagat
atgccctacctccccgatggtcgtcccgtcgatatcgttctcaatcccctaggggttccc
agtcgcatgaacgtcggtcaggtgtttgaatgtttactgggttgggctggcgaaaatctg
ggcgtgcgctttaagattactccttttgacgaaatgtatggggaagaagccagccgtttg
accgtccacggattgctagaaaatgcctcgaaaaaacccaatcgtgattgggtgttcaag
gaagaacacgcgggcaaagtcaccgtttacgatggtcgcaccggcgaaccctttgaccgt
cccgttaccgtcggtatggcctatatgttaaaactggttcacctagttgatgataaaatt
cacgcccgttctaccggtccctactccttggttactcagcaacccctgggcggtaaagct
caacagggaggccagcgcttcggagaaatggaagtctgggccctggaggcctacggggca
gcctataccttgcaggaattgctcacggtgaaatccgatgatatgcaaggacggaatgag
gctttaaatgcgatcgtaaaaggcaagccgattccccgcccgggtacgccagaatccttt
aaggttttgatgcgagaattgcaatccctcggcctcgatatcgccgttcacaaggtggaa
aatgcccccgatggtacttcccgcgatgtggaggtggatctgatggtcgatgtcggtcgt
cgcgccccctctcgccccacctacgaatctttaaccacggaagactttgaggaagaagaa
tcggaagtgtaa
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