Methylorubrum populi: Mpop_0006
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Entry
Mpop_0006 CDS
T00760
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
mpo
Methylorubrum populi
Pathway
mpo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mpo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Mpop_0006
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mpo03019
]
Mpop_0006
03400 DNA repair and recombination proteins [BR:
mpo03400
]
Mpop_0006
Enzymes [BR:
mpo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Mpop_0006
Messenger RNA biogenesis [BR:
mpo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Mpop_0006
DNA repair and recombination proteins [BR:
mpo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Mpop_0006
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
ResIII
Motif
Other DBs
NCBI-ProteinID:
ACB78202
UniProt:
B1ZE41
LinkDB
All DBs
Position
5928..7775
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AA seq
615 aa
AA seq
DB search
MSKRLDEARAALKKTFGYDDFRPGQDEVIGAVLDGADVFAVMPTGSGKSMTYQLPALVDA
GLTVVVSPLIALMHDQVQQMHAFGIEAATLNSTVAEATSRETWRKIRSGDLRLLFVSPER
LLMDGCMDALRGAGVRRLAVDEAHCVSQWGHDFRPEYREIARAREALGNVQTLALTATAD
AATRAEIAERLFPAGRPPRTFVHSFDRPNIRLTFQPKDNPTRQLERFLRDRRAESGIIYC
SSRKRVEQLADTLKGDGFNALPYHAGLDQSTRARNQDTFLQEDGVVMTATIAFGMGINKP
DVRYVCHADMPTNIEGYYQEIGRAGRDGLPSDTLTLYGLDDMALRRRQIDEKEISEERRR
VERRKLEVIIALCEGAACRRQSLLGYFGEASERCGRCDLCRSGVSLIDGTVAAQKLLSAI
VRTGQRFGAAYVCDVVHGKESEPIRRNGHAALKTFGVGADKPVAAWRALLRQLFAAGAVA
ENTDGYGGLVMTEKGEAILFGRETIEVRPDPEPKKAEPRSRRPVARDDEANALNEADEAL
FQHLRGLRATIARAEGIAAFMVFPDRTLIEMARAKPVDLWALRTVHGVGERKREAYGQRF
TDAISEFLADAKKTG
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaacgcctcgacgaggcccgtgccgcgctgaagaagaccttcggctacgacgat
ttccgccccggtcaggacgaggtgatcggtgccgtgctcgacggcgcggacgtgttcgcg
gtgatgccgacgggctcgggcaagtcgatgacctaccagctgcccgccctggtcgatgcc
gggctgaccgtggtggtctcgcccctgatcgcgctgatgcacgatcaggtgcagcagatg
cacgccttcggcatcgaggccgcgaccctcaattcgaccgtggccgaagccacctcccgc
gagacgtggcgaaagatccgctcgggcgacctgcgcctcctgttcgtctcgcccgaacgt
ctcctgatggacggctgcatggacgcgctgcgcggcgccggggtacggcggctggccgtg
gacgaggcgcattgcgtgtcgcaatggggccacgacttccgccccgaataccgcgagatc
gcccgcgcccgcgaggcgctcggcaatgtgcagacgctcgcgctcaccgccaccgccgac
gcggcgacccgggccgagatcgccgagcggctgttcccggccgggcggcccccgagaacc
ttcgtccattccttcgaccggccgaacatccggctgaccttccagcccaaggacaacccg
acccgccagctggagcgcttcctacgcgaccggcgggccgagagcggcatcatctactgc
tcgtcgcgcaagcgcgtggagcaactggccgacaccctgaagggcgacggcttcaacgcc
ctgccctaccatgccgggctcgaccagagcacgcgggcgaggaaccaggacaccttcctg
caggaggacggcgtggtgatgaccgccacgatcgccttcggcatgggcatcaacaagccc
gacgtgcgctacgtctgccacgccgacatgccgaccaacatcgagggctactatcaggag
atcggccgcgccggccgcgacgggctgccctccgacacgctgaccctctacggcctcgac
gacatggcgctgcgccgccgccagatcgacgaaaaggagatttcggaggagcgccgccgt
gtggagcggcgcaagctcgaggtgattatcgcgctctgcgagggcgccgcctgtcggcgc
cagtcgctgctcggctatttcggcgaggcgagcgagcggtgtggccgctgcgatctctgc
cgcagcggcgtctccctcatcgatggcacggtggcggcgcagaagctgctctcggccatc
gtgcgcaccggccagcgcttcggcgcggcctatgtctgcgacgtcgtgcacggcaaggag
agcgaaccgatccgccgcaacgggcacgccgcgctgaagaccttcggcgtcggcgccgac
aagcccgtcgcggcgtggcgcgccctcctgcgccagctcttcgctgcgggggccgtggcc
gagaacaccgacggctatggcggcctcgtcatgaccgagaagggcgaggcgatcctgttc
ggccgcgagaccatcgaggtccgccccgatcccgagccgaagaaggccgaacccaggagc
cgccgtcccgtggcccgcgacgacgaggcgaacgcgctgaacgaggcggacgaggccctg
ttccagcacctgcgcggcctgcgggcgaccatcgcccgggccgagggcatcgccgccttc
atggtgtttccggatcggacgctgatcgagatggcgcgcgcgaagccggtcgatctctgg
gcgctccgcacggttcacggggtcggcgagcgcaagcgcgaggcctatggccagcgtttc
accgatgcgatcagcgaatttctggccgacgccaagaagaccggttga
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