Marinomonas primoryensis: MP3633_2631
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Entry
MP3633_2631 CDS
T06705
Name
(GenBank) 3'-to-5' exoribonuclease RNase R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
mpri
Marinomonas primoryensis
Pathway
mpri03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mpri00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MP3633_2631
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mpri03019
]
MP3633_2631
03016 Transfer RNA biogenesis [BR:
mpri03016
]
MP3633_2631
Enzymes [BR:
mpri01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
MP3633_2631
Messenger RNA biogenesis [BR:
mpri03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MP3633_2631
Transfer RNA biogenesis [BR:
mpri03016
]
Prokaryotic type
tRNA degradation factors
MP3633_2631
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
Motif
Other DBs
NCBI-ProteinID:
QKK81358
UniProt:
A0A859CXM9
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All DBs
Position
KMM3633:complement(2802236..2804833)
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AA seq
865 aa
AA seq
DB search
MSNKKINDPHMQREASKYDNPVPSREFILEFLATQNKSMGHFDLCTAFSLTGEDEIEALR
RRLIAMCRDSQLTSNQNDEYTPILESDLIEGYVQGNKEGHGFLLRQNDDDIFLSFRQMQN
VMDGDKIKARLSGRSVKGRLDGVVVEVLERKHTQMVGRYYLEKNGQESGTAFVTPENPRI
AQDIQITTDSGLTPKHGQYVLAEIVSYAERGKPAQGLVKKILGDFMAPGVEIEVAMHRYE
IPNEWPAAVEKQAKSFTAEVSEEDKAHRVDLRETPFVTIDGEDARDFDDAVYCEKTAGGW
KLFVAIADVSHYVKKDSALDEEAIVRGNSVYFPGKVIPMLPEVLSNGLCSLNPDVDRLAM
VAEISLTTKGKMRGFKFYEGLIRSHARLTYSKVAKMIAAEPEEQGIELRERYASIVSHID
DLNGLYHTLKGARDERGAMEFDTVETRMVFDENSKIEHIIPVERNDAHKLIEECMLCANV
ATAELLIKADLPALFRVHEGPKEDRLLTLRTYLGLLGLELMGGLKPTPDDYAKLAEQLKG
RADSRSIQTMMLRSMSQAVYQADNLGHFGLNYDAYTHFTSPIRRYPDLLVHRAIRYLIRG
EGRPDVRQAHRVAGSLELKERKIYGYDHADMDGFGDSCSVTERRADEATRDVEAWLKCQY
VEQHLGEPFVGIVTAVTSFGLFVELQGLFVDGLVHISGLGQDYFVHDMEHQAIIGERTGR
VFRLGDTLKVTVASVNLEQRKIDLSLDDAGASPSRPRKKVERNDSTELEMQLAQLPPIEL
GGRPKPKAAKKADVKGEKTTKDAKESDGKAKKKRRPPVSKGKRIRQKKSASAAAAASGKP
ASAAAKKPKKPKKPKKNNAKPKAKD
NT seq
2598 nt
NT seq
+upstream
nt +downstream
nt
ttgagtaataaaaaaattaacgaccctcacatgcagcgcgaagcgtctaagtacgacaac
ccggtaccaagccgtgaattcattctagagtttcttgcaacccaaaataaaagcatgggc
cactttgacctatgcactgcattttcgctgactggcgaagatgaaatagaagccctccgt
cgtcgtctcattgctatgtgtcgagacagccagctaaccagcaaccaaaatgatgaatac
acgccgattttggaaagtgacttaatagaaggttacgttcaaggcaataaagaaggtcat
ggtttcttgttacgtcaaaacgatgacgatattttcctatcttttcgtcaaatgcagaac
gtgatggacggcgataaaataaaagcacgtctttctggccgcagtgttaaaggccgttta
gatggtgttgtcgttgaagtgctagaacgtaagcatacccaaatggttggtcgctattac
ctagaaaaaaatggtcaagaaagcggcaccgcgtttgtaacaccagaaaatcctcgtatt
gcgcaagacattcaaatcacgacagattccggtttaacgccaaaacacggtcagtatgtt
ttggctgaaattgtgtcttatgcggaacgtggcaaaccagcgcaaggtcttgttaagaaa
attctcggtgactttatggcgccgggtgttgaaattgaagtggcgatgcatcgttacgag
attcctaacgaatggccggcggcggttgagaagcaagccaagagcttcaccgcagaagta
tcagaagaagacaaagcacatcgagtggatcttcgagagacaccttttgttacgatcgat
ggcgaagacgcgcgcgactttgatgatgccgtatattgtgagaaaaccgctggtggatgg
aagttatttgtcgccatcgccgatgtttcccattatgtgaaaaaagactcagccttggat
gaagaggccattgttcgtggtaactctgtttacttcccgggtaaagtgattccgatgttg
ccggaagtcttgtcgaacggtttgtgttcccttaatccagatgttgaccgtttggcgatg
gtggcagaaatttcgttgaccacgaaaggcaagatgcgtggctttaaattctatgaaggc
ctgattcgctctcacgctcgtttgacctattctaaggtcgcgaaaatgatcgctgcagag
ccagaggagcaaggaatagagctacgcgagcgttatgcttctattgtttctcatattgat
gacttgaacggtctgtatcacacgctaaaaggtgcccgtgatgaacgtggtgcaatggag
tttgataccgttgaaacccgtatggtgttcgatgaaaactccaagatagagcatattatt
cccgttgagcgtaacgatgctcataaattgattgaagagtgtatgttgtgcgccaacgtg
gcgacggcagagctattgatcaaggcagacttgccggctttgttccgtgtgcatgaaggt
ccaaaagaagatcgtttgttaacgctgcgaacttacttaggtttgctagggttggagctg
atgggtggtttgaagccaaccccagacgattacgcaaaactggcagaacagttaaaaggt
cgtgcggattcccgtagcattcaaaccatgatgttgcgttctatgtcccaagcggtttat
caagcagataacttaggccactttggtttgaattacgacgcttatactcactttacgtcg
cctattcgccgttatcctgatttgttagtgcatcgtgcgattcgttatttgattcgtggt
gaaggccgcccagatgtgcgtcaggcgcatcgtgtagcgggaagtcttgagcttaaagag
cgtaaaatttacggttacgatcatgcggatatggatggctttggtgattcttgttctgtg
acagagcgccgtgccgatgaggcaacgcgtgacgtagaggcttggttgaaatgtcagtat
gttgagcaacatcttggcgaacctttcgttggaattgtgaccgcggtgacctcgtttggt
ttgttcgttgagctacaaggtttatttgtcgatggtttggtgcatatttcagggcttggg
caagattactttgttcacgatatggagcatcaagcgattattggcgagcgtacaggtcgt
gtattccgtttaggcgatacattgaaagtcactgtggccagtgtgaatcttgagcagcgt
aagatcgatttaagcttggatgatgcgggcgcatcgccatcgcgtcctcgtaaaaaggta
gagcgcaacgacagtaccgagctggaaatgcaattggctcagttgcctccgattgaattg
ggtggacgacctaaacctaaagcggctaaaaaagcagatgttaaaggtgagaaaaccact
aaagacgctaaagagtcagatggcaaagccaagaaaaagcgccgtcctcctgtttctaag
ggtaagcgtattaggcagaagaaatcggcgtcggcagccgctgcagcaagtggtaaaccg
gccagcgcggcggccaaaaagcctaaaaaaccgaagaaaccaaaaaagaacaatgccaag
ccaaaagcgaaagattga
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