Meiothermus ruber DSM 1279: Mrub_0098
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Entry
Mrub_0098 CDS
T01193
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
mrb
Meiothermus ruber DSM 1279
Brite
KEGG Orthology (KO) [BR:
mrb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mrb03019
]
Mrub_0098
Enzymes [BR:
mrb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Mrub_0098
Messenger RNA biogenesis [BR:
mrb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Mrub_0098
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
AAA_30
ResIII
AAA_19
nSTAND3
Motif
Other DBs
NCBI-ProteinID:
ADD26879
UniProt:
D3PKJ8
LinkDB
All DBs
Position
complement(75820..78300)
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AA seq
826 aa
AA seq
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MKDASLPIYTVLPALRKALGTHRTVVLQAPPGAGKSTLLPLELLKEPWLEGQKIWMLQPR
RLAARNVAARMADLLGEPVGQTVGYQVRFERRVGPATRIEVLTEGILTRRLQQDPGLEGV
GLILFDEFHERSLQADLGLVLCREVQQALRPDLRLLLMSATLDAEGLGAFLQAPVLTAEG
RQYPVEIRYLPKDPEGPLPGVVAGAVSRALAEQAGDVLVFLPGVGEITRVERLLTERHPE
IKITPLYGDLPLAAQQAAILPDPARRKVVLATSIAETSLTIEGIRVVVDSGYSRLPRFEA
RSGLTRLVTVRVTRDAAQQRAGRAGRLGPGVCYRLWSPATDAQLLPQRRPEILEADLASL
VLELARWGVQDPFALDWVTPPPAGALRQARDLLEALGALEGPTLTERGKALLEWPTHPRL
AHLLLEGLALGQGALATDLAALLEERDPLPRETGADLGLRIEALRHWRQTRQALHSAETG
VLSRVERLSQEWRKRLGVTADNRPPEPHMVGLLVAQAYPDRLAHLREGDRLRYRLSGGRG
VRLGEDDPLAGTPWLAVAHLDAGQEEGRIFLAAPVEPEHLAPRARPVEHIAWDARNGVLL
AQRELRIGEVVLSKEPLARLEPARRREVLCRAVRSEGLGLLPWTEALRQWQARVLSLRSW
RPQEGWPDVSDAHLLETLEDWLAPWLDGVSRREDFGRLELQSLLGGLLPWPLPARLEALA
PTRLEVPSGSKIKLTYSPDGSPPVLAVKLQELFGLADTPTVNEGRTPVLLHLLSPAGRPI
QVTQDLKSFWNNTYPEVRKELRGRYSKHPWPEDPWNAEPTRKTKPR
NT seq
2481 nt
NT seq
+upstream
nt +downstream
nt
atgaaggacgctagtctgcccatctataccgttctgcctgccttgcgaaaagccctgggc
acgcaccgcacggtcgtcctgcaagccccgcccggcgcgggcaagagcacgctgctgccg
ctggaactgctgaaggagccctggctcgagggccagaagatctggatgctacagccccgc
cgcctggccgcccgcaacgtggcggcgcgcatggccgacctgctgggggagccggtgggc
cagaccgtgggctaccaggtgcgcttcgagcgccgggtggggcccgccacccgcatcgag
gtgctcaccgagggcatcctgacccgccggctacagcaagaccccggcctggaaggggtg
gggctgatcctcttcgacgagttccacgagcgcagcctccaggccgatctggggctggtg
ctgtgccgcgaggtgcagcaggccctgcgcccggatctgcgcctcttgctgatgtcggcc
accctggacgcagaggggctgggcgcgtttttgcaagcccccgtcctgacggcggaaggg
cggcagtacccggtagagattcgctacctgcccaaagaccccgagggccccctgccgggg
gtggtggccggtgcggtctcgcgggctttggccgagcaggcgggcgatgtgctggtcttt
ctgccgggggtgggcgagattacccgggtggagcggctgctgacggaacggcatcccgaa
attaaaatcaccccgctctacggcgacctgccgctggccgcccagcaggccgccatcctg
cccgacccggcgcgccgcaaggtggtgctggcgacctccattgccgagaccagcctgacc
atcgagggcatccgggtggtggtggactcggggtactcgaggctgccccgcttcgaggcc
cgaagcggcctcacccgtctggtcaccgtgcgggtcacccgcgacgccgcccagcagcgg
gccgggcgggccgggcgcctggggccgggggtctgctaccgcctgtggagcccggccacc
gatgcacagctcctgccccagcgccggccggagattctggaagccgatctggcctcgctg
gtgctcgagctggcccgctggggggtgcaggatcctttcgccctggactgggtcacacca
ccccccgccggggccctccggcaggcccgcgatctgctcgaggccctgggggcgctggaa
ggccccaccctgaccgagcggggcaaggccctgctcgagtggcccacccacccccggctg
gcccatttgctgctggaaggcctggctttggggcagggcgccctcgccactgacctggcg
gcgctgctggaggagcgcgaccccctgccccgcgaaactggggccgacctgggcctgcgc
atcgaagccctgcggcactggcgccagacccggcaggctttgcacagcgccgagaccggt
gtgctgtcccgggtggagcgcctcagccaggagtggcgcaaacggctgggggtgacggcc
gacaaccgcccccccgagccgcacatggtgggcctgctggtggcccaggcctaccccgac
cgcctggcccacctgcgcgaaggcgaccgcctgcgctaccggctctcgggggggcgcggg
gtgcggctgggcgaggacgaccccctggccggcaccccctggctggccgtagcccatctg
gacgccggtcaggaggaagggcgcatctttctggcagcgccggtcgaacccgagcacctg
gccccccgggcccgtcccgtggagcatatcgcctgggatgcccgcaacggggttctgctg
gcccagcgagagctgcggattggggaggtggtgctatccaaagagcccctggcccgcctc
gagcccgccaggcgccgcgaggtgctgtgccgggcagttcgcagcgagggtttggggctt
ctgccctggacggaagcgctgcgccagtggcaggcccgcgtgctgagcctgcgcagttgg
cggccccaggaaggctggcccgacgtctccgatgcccacctgctggagaccctcgaggac
tggttggccccctggctggacggggtctcgcgccgcgaggactttggccggctcgagctc
caaagcctgctgggcgggcttttaccctggccgctcccagcccgcctggaggccctggct
cccacgcggctcgaggtgcccagcggctccaaaatcaagctcacctacagccccgatggc
agcccgccggtactggcggtcaagctgcaggagctctttggcctggccgatacccccacc
gtcaacgagggccgcaccccggttttgctgcacctgctctcccccgccgggcggcccatc
caggtaacccaggatctcaagagcttctggaacaacacctaccccgaggtgcgcaaggag
ttgcgcgggcgctacagcaagcacccctggcccgaagacccctggaatgccgaacccacc
cggaaaaccaagccgcggtga
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