Microbacterium rhizosphaerae: SM116_11510
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Entry
SM116_11510 CDS
T09585
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mrg
Microbacterium rhizosphaerae
Pathway
mrg03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mrg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
SM116_11510
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mrg03400
]
SM116_11510
Enzymes [BR:
mrg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
SM116_11510
DNA repair and recombination proteins [BR:
mrg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
SM116_11510
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
WPR88403
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Position
2547448..2549841
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AA seq
797 aa
AA seq
DB search
MPRDESTVRIGGRRLRISNLDKVMYPETGTTKGEVIDYYARIAPAMLPWIAGRPVTRKRW
PDGVGTEEHPADWFFAKDLEPGAPDWLARLPIDHSSGAKDYPVVDDVASLVYLAQVASLE
IHVPQWRFDAHGGRSNPDRMVLDLDPGPGVGLVECAEVARRARGILQDMGLDPVPVTSGS
KGIHLYAALPGKQTSDQVSAVARELARALEADDPALVVSQMAKSIRPGRVFLDWSQNNGS
KTTIAPYSLRGRPHPTVAAPRTWEELHDPDLRHLTFDEVLTRAPSAPPDASAPLQTYIDK
RSADRTPEPVPDSPRAAPTAVGGLPRFVIQEHHARRLHWDFRLERDGVLVSWAVPKGVPP
DGSRNSLAVMTEDHPLDYGSFEGEIPHGEYGAGSVTIWDDGVYELEKWRDSEVIATLDGR
PGGPLGGRARVALIRTGGEGEKSTWLLHRMALEDEPAPHPARPNPEPTAPAATSRPTVAP
MLATAATPAQARNAVRRWGDAEPWVEAKWDGIRALGIWDGERLRLRARSGADITEKYPEL
TGGDLDLGPDPAVLDGEIVALDATGRPSFTRLQSRMNLTRSSEIAREAPRTPVQWYLFDV
LSWGGADATDLPLAQRRGILERIPVHAPVVIPPVFDDLEAALSASRALGLEGVVLKDPRS
RYRSGSRGEEWLKVKHTRTQEVVIGGIRPGRRPIASLLLGIPGHDGLRYAGRVGTGFTER
DIERLQSLLTPLRTDVSPFATVPAADASDALWVRPELVGEVEYAELTPGGILRHSRWRGL
RPDKSPGEIVREDDSPA
NT seq
2394 nt
NT seq
+upstream
nt +downstream
nt
atgccccgggatgagagcacagtgaggatcggaggacgtcgtctgcgcatctcgaacctc
gacaaggtcatgtaccccgagaccggcacgaccaagggcgaggtcatcgactactacgcg
cgcatcgcgccggcgatgctgccctggatcgccggccgtccggtcacccgcaagcgttgg
cccgacggcgtcggcaccgaggagcatcctgccgactggttcttcgcgaaggacctcgag
cccggcgcccccgattggctcgcacggctgccgatcgaccattcgagcggtgcgaaggac
taccccgtggtggatgacgtcgcctccctcgtctacctcgcacaggtggcgagcctggag
atccacgtcccgcagtggcggttcgacgcccacggcggcaggtcgaacccggaccggatg
gtgctggacctcgacccgggtcccggtgtcggactcgtggagtgcgccgaggtcgcgcgc
cgggcgcgcggcatccttcaggacatgggactcgacccggtcccggtcacgagcggcagc
aagggcatccacctctacgcggcgctgccgggaaagcagaccagcgaccaggtctccgcg
gtggcgcgcgagctcgcccgcgcgctggaggccgacgaccccgctctcgtcgtgagccag
atggcgaagtcgatccgccccggtcgcgtgttcctggactggagccagaacaacgggtcg
aagacgacgatcgcgccgtactcgctccgcgggcgaccgcatcccaccgtcgccgcaccc
cgcacgtgggaggagctccacgacccggacctgcgccacctcaccttcgacgaggtgctg
acgcgtgcgccgagcgcaccgccggacgcgagcgcaccgctccagacctacatcgacaag
cgcagcgccgaccgaacgccggaaccggtccccgacagcccccgcgctgcgcccacggcc
gtcggaggactgccgcggttcgtgatccaggagcatcatgcccggcgcctgcactgggac
ttccggctggagcgcgacggcgtcctcgtgagctgggcggtgcccaagggcgtgccgccc
gacggatcccgcaacagcctcgcggtcatgacggaggaccacccgctcgactacggctcg
ttcgagggcgagatcccgcacggcgagtacggcgcaggcagcgtgacgatctgggacgac
ggcgtgtacgagctcgagaagtggcgcgacagcgaggtcatcgccaccctcgacggccgg
ccgggcggcccgctcggcggccgcgcccgggtcgccctcatccgcaccggcggcgagggc
gagaagtcgacgtggctgctgcaccgcatggccctggaggacgagccggcccctcacccc
gcgcgaccgaacccggagcccacagcgcccgccgcgacctcgcgccccacggtcgccccc
atgctggcgaccgccgcgacccccgcgcaggcccggaacgccgtccggcggtggggcgac
gcagagccgtgggtcgaggccaagtgggacggcatccgcgccctcggcatctgggatggt
gagcgcctgcgcctgcgcgcgcgcagcggcgccgacatcacggagaaataccccgagctg
accggcggcgacctcgacctcgggccggatcccgccgtcctcgacggcgagatcgtggcg
ctcgacgcgacgggccggccgagcttcacccgattgcagtctcggatgaacctcacccgc
tcgtcggagatcgcgcgcgaggccccgcgcaccccggtgcagtggtacctgttcgacgtc
ctctcgtggggcggggcggacgccaccgacctgccgctcgcccagcgccgcggcatcctg
gagcgcatccccgtccacgctccggtcgtcatcccgcccgtcttcgacgacctcgaggcg
gcgctgtcggcgagccgggcgctcgggctcgagggcgtggtcctcaaagaccctcgttcg
cgttaccgcagcggctcccgcggtgaggagtggctcaaggtcaagcacacgcgcacgcag
gaggtggtgatcggcggaatccgacccggacgccgccccatcgcgtccctcctcctcggc
atccccgggcacgatggcctgcggtatgccggacgcgtgggcaccggattcaccgagcgc
gacatcgagcgcctgcagtcgctgctgacgccgctgcgcaccgacgtctcgcccttcgcc
accgtcccggccgcggacgcgtcggatgcgctgtgggtgcgacccgagctggtcggagag
gtcgagtacgcggagctgacgcccggcggcatcctccggcactcgcgctggcgcggcctg
cgccccgacaagtcgcccggcgagatcgtccgcgaggacgactctcccgcctaa
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