Mycolicibacterium smegmatis INHR1: LI99_01100
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Entry
LI99_01100 CDS
T03409
Name
(GenBank) RNA polymerase factor sigma-70
KO
K03088
RNA polymerase sigma-70 factor, ECF subfamily
Organism
msn
Mycolicibacterium smegmatis INHR1
Brite
KEGG Orthology (KO) [BR:
msn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
msn03021
]
LI99_01100
Transcription machinery [BR:
msn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
LI99_01100
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4_2
SnoaL_2
Sigma70_r4
NTF2
SnoaL_4
SnoaL_3
Motif
Other DBs
NCBI-ProteinID:
AIU12123
UniProt:
A0A8B4QJW5
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Position
complement(245271..246293)
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AA seq
340 aa
AA seq
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MSVILRKLTTVTVLAHKLDDDSPADAFLAEAQTYRRELLAHCYRMTGSLHDAEDLVQETY
LRAWKSYQGFQGRSSVRTWLYRIATNTCLTSLEGRSRRPLPSGLGTPSSAPTDQITEHHE
VPWLEPLPDGDDPADPSQIVGTRESVRLAFVAALQHLSPRQRAVLVMREVLQWKASEVGE
AIGASTAAVNSLLQRARAQLEAVGPNEDDKIEAPDSPQAQATLDRYIAAFEAYDIDKLVE
LFTEEAIWEMPPFDSWYQGPQAIGDLSRYKCPAEEPGDMRFLQTTANGQPAAAMYMLNRE
TGRHEAFQLHVLDITADGISHVVAFMGEGLFKKFGLPETL
NT seq
1023 nt
NT seq
+upstream
nt +downstream
nt
atgtcggtcatcctgcgtaagctcacgactgtgacggtcctcgcacacaaactcgacgat
gacagtcctgccgacgccttcctggccgaagcccagacctaccggcgggagctgctcgcg
cactgctaccgcatgaccgggtctctgcacgacgccgaggatctggtgcaggagacgtac
ctgcgcgcgtggaagtcctaccaggggtttcaaggcagatcgtcggtgcgcacatggctg
taccgcatcgccaccaacacgtgcctgacgtcattggagggccggtcgcgtaggccgttg
ccgtccggtctcggcacgcccagttccgcgccgacggaccagatcaccgagcaccacgag
gtgccgtggctggagccactgcccgacggcgacgatccggccgatccgtcgcagatcgtc
ggcacgcgcgaatcggtgcggctggcgttcgtggccgcgctgcagcacctgtcgccacgg
caacgcgcggtgctggtgatgcgtgaggttctgcagtggaaggcctccgaggtcggcgag
gccatcggagcctccaccgcggccgtcaacagcctgctgcagcgtgcccgcgcgcagctc
gaggccgtgggccccaacgaggacgacaagatcgaggcgccggactcgccgcaggcgcag
gccacgctcgaccgctacatcgcggcgttcgaggcctacgacatcgacaagctggtcgag
ttgttcaccgaagaggccatctgggagatgcctcccttcgacagctggtaccaggggcca
caggccatcggcgacctgtcgcgctacaagtgcccggccgaggagccgggcgacatgcgc
tttctccagacgaccgccaacggtcagcctgctgcggcgatgtacatgctgaaccgggag
accggccggcacgaggccttccagttgcatgtcctcgacatcaccgccgacggcatctcc
catgtcgtggcgttcatgggcgaggggctgttcaagaagttcgggctgcccgaaacgctg
tag
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