Methanosphaera stadtmanae: Msp_0641
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Entry
Msp_0641 CDS
T00313
Name
(GenBank) conserved hypothetical membrane-spanning protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
mst
Methanosphaera stadtmanae
Brite
KEGG Orthology (KO) [BR:
mst00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mst03016
]
Msp_0641
Enzymes [BR:
mst01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Msp_0641
Transfer RNA biogenesis [BR:
mst03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Msp_0641
Prokaryotic type
tRNA splicing ligases
Msp_0641
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
ABC57039
UniProt:
Q2NGL4
LinkDB
All DBs
Position
749108..750556
Genome browser
AA seq
482 aa
AA seq
DB search
MVGKGDLEKVRDCVYEIPSSARKDMRVPARIYLDEESIKTLEDGAIEQVANVACLEGIQK
RSIGLPDIHFGYGFSIGGVAAFSEINGVVSPGGVGFDINCGVRLLKTNLTKQDIQPHLKD
LVNELFNKVPSGLGSNGIKHLKESEIDDVLENGAKWAVENGFGWEEDLKFLEENGCMEGA
DASLVSTKAKRRGIPQLGSLGSGNHFLEIQSIGDIYDEEIAKAYGLEKDQVVVLIHTGSR
GCGYQICADNLREMDKTAKRLKLNLPDRQLACAPIDSDEGQNYLKAMAAGANYAWTNRQM
IQHWVRESFENILKQDAESLGLNVLYDVAHNIIKKEQHKIGKINRNMYVHRKGATRAFGP
GRKEIPQEYRSVGQPVLIPGTMGTSSYILAGTETAMDETFGSTAHGAGRVLSRSGAKREF
TPEEISKDLADKGIILKANSQPVIAEEAPNAYKDVDSVVKTADKTGISKLVAQMKPLGVI
KG
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atggtaggaaaaggagatttagaaaaagttagagattgtgtatatgaaattccatcatca
gcaagaaaagatatgagagttcctgctagaatttatttagatgaagaatcaataaaaaca
ttagaagatggagcaattgaacaagtagctaatgtagcatgtcttgaaggaatacagaaa
agatcaataggattaccagatattcactttggatatggatttagtattggaggagtagca
gcattctctgaaattaatggagtagtaagtcctggaggagtaggttttgatattaactgt
ggagtaagactactaaaaacaaatcttacaaaacaagacatacaacctcatcttaaagat
cttgttaatgaattatttaataaagtaccatcaggtcttggaagtaatggtataaaacac
ttaaaagaatctgaaatagatgatgtactagaaaatggtgctaaatgggcagtagaaaat
ggatttggatgggaagaagatcttaaattccttgaagaaaatggttgtatggaaggagca
gatgctagtttagtaagtacaaaggcaaaaagaagaggtataccacagcttggatcactt
ggaagtggaaatcatttcctagaaattcaatcaataggtgatatatatgatgaagaaatt
gcaaaagcatatggtctagaaaaggatcaagtagtagtattaatacatacaggttctcgt
ggatgtggatatcaaatctgtgcagataatctacgtgaaatggataaaactgcaaaaaga
ttaaaattaaatctaccagatagacaacttgcatgtgcaccaatagattctgatgaagga
caaaactacttaaaagcaatggctgcaggtgcaaactatgcatggacaaatagacaaatg
attcaacattgggtaagagaatcatttgaaaatattttaaaacaagatgcagaatcatta
ggtttaaatgtattatatgatgtagcacataacataattaaaaaagaacaacataaaatt
ggtaaaattaatagaaatatgtatgtacatcgtaaaggagcaacacgtgcatttggtcct
ggaagaaaagaaattccacaagaatatagaagtgtaggtcaacctgtactcataccaggt
actatgggaacttcatcctatatattagctggaactgaaactgcaatggatgaaacattt
gggtctacagcacacggagctggaagagtacttagtaggtctggtgcaaaacgtgaattt
actccagaagaaatatcaaaagatttagcagataaaggaattattcttaaagcaaattca
caaccagttattgctgaagaagcacctaatgcatataaagatgttgattcagttgtaaaa
actgctgataaaacaggtataagtaaacttgttgctcaaatgaaaccattaggtgtaatt
aaggggtaa
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