Marinobacter similis: AU14_01280
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Entry
AU14_01280 CDS
T03594
Name
(GenBank) RNA helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
msx
Marinobacter similis
Brite
KEGG Orthology (KO) [BR:
msx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msx03019
]
AU14_01280
Enzymes [BR:
msx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
AU14_01280
Messenger RNA biogenesis [BR:
msx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
AU14_01280
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_19
nSTAND3
ResIII
AAA_22
NACHT
ABC_tran
T2SSE
AAA_30
AAA_23
Peptidase_S66
Sigma54_activat
Motif
Other DBs
NCBI-ProteinID:
AHI27781
UniProt:
W5YFA5
LinkDB
All DBs
Position
258330..262265
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AA seq
1311 aa
AA seq
DB search
MTNTTTDRTSAVNPPPDGKAAVKAMMSQLEICNQQEAARILKAVARSKGDPGQKDLEKMA
RWLERGLEKVQQRQALHKTASFPDGLPVSERVDDIQQAIENNQVVIIAGETGSGKTTQIP
KICMNSGRGIRGVIGHTQPRRIAARSVAARISDELGEQTGQQIGYQVRFTDTTSEQSRVK
VMTDGILLAEIQHDRFLDRYDTLIIDEAHERSLNIDFILGYLRQLLPKRPDLKVIITSAT
IEVERFSEFFNQAPVIEVSGRTFPVDVRYRPLTGDEDDRDQGWTDGVISALDEIEQHERS
EKQPPGDVLVFLPGEREIRNLSKVLRHVDLKHTEILPLYSRLSNQEQNRVFQSHRGRRIV
LSTNVAETSLTVPGIRYVIDTGVARISRYSVRSKIQRLPIEPISQASANQRAGRCGRVAP
GICFRLYDETDFINRPEYTDPEILRTNLASVILQMATSGLGEIRNFPFLEAPDRRQVNDG
YKLLEELSAVDDKRRVTKLGRTMSRLPLDPRLARMLVTAADKGSLAETLIIIAGLSVQDP
RERPQEKQQAADQAHAAFNDKESDFVTLLNIWNFYEEQRQELSQNQMKKVCQKNFLSWMR
MREWRDIHRQLTLICREQKLASNKDAASYEALHQAILAGLLGQVAVKVEKKEYLATRNRK
VLIFPGSKVSKTGPKWIVATEIVETSRVFARMVAAIQPEWIEPLAGHVVKHNYFEPHWEQ
KRAQVMGYEKVTLYGLDVVPKRRIPYSKVDPAECRNLFIRRALVEGDYRSKAPFIARNRA
MLDTVENLEKKTRRRDLLVDDEALVAFYDERLPADIVSGRHFETWWKSLSAEELKHLELT
EEDILQRPVDAQAGELYPDYLEWEGVRYPLSYEFEPTSERDGVTLQVPLMALKQIPSRRL
EWLVPGLLREKCVALVKGLPKSLRRNFVPVPDFVDAALANMQPSNEPLALQLAEQLRRMT
GVRIDPGAWPESELPRHLRMNLRVMGDGGKVMAEGRETFQLQDQLEGKAEEALASATSES
KTAEPTAEHADWQFGTLPEQVQTEKGGMQVTVYPALEDQGKSVRQIRCLDRLTAEDTTRK
AVARLILNRFGKTLDDLERKLPKFKQSALMFAPIGRASVLLDDLLLATAMQHFLGDGLPR
TSEAFDALFDRHRGDFIPALEDADQRLYQAMTGYQKVAKRLKGKISLALASSMADLKFQL
SNLVYPGFLVATPPEWLAEFGRYFEAALVRLEKMPREMGREREFLHTIEPLWSRYASKRD
ELLRQGVRDPELIVYRWMLEEFRVSFFAQQLGTAMTVSVKRLERQWEQTRI
NT seq
3936 nt
NT seq
+upstream
nt +downstream
nt
atgacaaacaccaccactgatcgaaccagcgccgtcaatccgccgcctgatggcaaagcg
gccgtgaaagccatgatgagccagctggagatctgcaatcagcaggaagccgcccggatt
ttgaaggccgtggcccgatccaagggggacccgggccagaaggatcttgagaaaatggca
cgatggctggagcggggcctcgaaaaagttcagcaacgccaggcgttgcacaaaacggcc
agttttccggacggcctgccggtgtcggagcgggtcgatgacatccagcaggccatcgag
aacaatcaggtggtgattattgccggtgaaaccggttccggtaagaccacccagatcccg
aaaatctgcatgaactcgggccggggtattcgcggtgtcattggtcatacccagccccgg
aggatcgccgcccgcagtgttgccgccagaatttccgatgagcttggcgagcaaacgggc
cagcaaattggttatcaggttcgattcaccgacacgacctcagagcagtcccgggtcaag
gtgatgactgacggcatactgctggcggaaatacagcacgatcgtttcctcgaccggtac
gacacgctgattatcgacgaggcgcacgagcgcagcctcaatatcgactttatcctgggt
tacctgcgccaacttctgcccaagcgccccgacctgaaagtgatcattacctcggcgacc
atcgaggttgagcgattcagtgagttctttaatcaggcgccggttattgaggtcagcggc
cgaacctttccggtggatgttcgttaccggccactgaccggcgatgaggacgatcgcgat
cagggctggactgacggagtgatttccgccctggatgaaatcgagcagcacgaacgctcc
gagaaacaaccgcccggcgacgtcctggtgtttctgccgggcgaacgggaaatccggaat
ctcagtaaggtgcttcgtcacgtagacctgaaacacacggaaatcctgccgctgtactcg
cgcctgagcaatcaggaacagaaccgggtgttccagtcgcaccgggggcgccggattgta
ctgtccaccaacgtggcagaaacttcactgacggtgccggggattcgctatgtgatcgac
accggtgttgccagaatcagtcgctatagcgtgcgctccaagatccagcgtctgcctatc
gagcccatctcccaggccagtgcgaaccaaagggcagggcgatgcgggcgggttgctcca
ggcatctgtttccggctgtacgatgaaactgacttcatcaatcgcccggaatacaccgac
ccggagatcctgcggaccaacctggcctcggtcattctgcaaatggcgacctctggcctg
ggtgaaattcgcaactttccgttcctggaggcgccagatcgccgccaggtcaacgatggc
tacaaactgctcgaagagctgagcgcggttgatgacaagcgtcgggtcaccaaacttggc
cgtaccatgtctcggctaccactggatccgcggctggcccggatgctggtcaccgcggcc
gacaagggcagtctggccgaaaccctgatcatcatcgccgggctgagtgtgcaggatccg
cgcgagcggccccaggagaaacagcaggccgcggaccaggcgcacgcggcctttaacgac
aaagaatcggatttcgttaccctgctgaacatctggaatttctacgaggagcaacgccag
gagttgtcccagaatcagatgaagaaggtttgtcagaagaatttcctgagctggatgcgc
atgcgcgaatggcgggacatccatcgccagctaaccctgatttgtcgtgagcaaaagctg
gcgtcgaataaagatgccgctagttacgaggcgctgcaccaggccatcctcgcgggcctg
ctcgggcaggtcgcggtgaaggttgaaaagaaggaatacctggcaacgcgcaaccggaaa
gtgctgattttcccgggctccaaggtgtccaaaaccggcccgaaatggatcgttgcaact
gaaatcgtggaaaccagtcgggtatttgcgcgcatggtcgcggccattcagcctgagtgg
atcgagcccctggccgggcatgtggtcaagcacaactatttcgagccgcactgggagcag
aaacgggcccaggtgatgggctacgagaaagtgaccctttacgggctggacgtagtaccc
aagcggcggattccatacagcaaggttgaccctgccgagtgccggaatctgtttatccgc
cgcgctctggtggaaggggattatcgctcgaaggcgccatttattgcccgcaatcgggcc
atgctcgacaccgttgaaaacctggaaaagaaaacccggcgccgcgacctcctggtggat
gatgaggcgttggtggccttctacgacgagcgcctgccggcagatattgtcagtggccgg
cacttcgagacctggtggaaaagcctgtctgccgaagagctcaagcatcttgagctgacg
gaagaggacattcttcaacgcccggtagacgctcaggcgggtgagttgtaccccgattac
ctggaatgggaaggcgttcgctatccgctgagctacgagtttgaacctaccagcgagcga
gacggggtgaccctgcaggtccccctgatggcgctcaagcagatcccatcccggcggctt
gaatggctggttcctggcttgctgagggaaaagtgtgtcgcgctggtgaagggattgccg
aagtccctgcggcgtaattttgtgccggttccggattttgtcgatgctgccctggcaaat
atgcagccttcgaacgaacctcttgccctgcagttggctgaacaactgaggcgcatgacc
ggggtacggattgatcccggggcctggccggagtccgaattgccccggcatttgcgcatg
aaccttcgggtcatgggggatggtggcaaggtcatggccgagggacgcgagacctttcag
ttacaggaccagttggagggcaaggcagaggaagcgttggcctcagctaccagcgaatcc
aagactgctgaaccgacggctgagcatgccgactggcagtttggcaccttgccggagcag
gtgcagactgaaaagggaggcatgcaggtaacggtttatcccgcgctggaagaccagggg
aaatcggtccgtcagatccgttgccttgatcgcctgaccgccgaagacaccacccgaaag
gccgtggcccgtctgattctgaaccgcttcggcaagaccctggatgatctggagcgtaag
ctgccgaagttcaaacagtctgcgctcatgtttgccccgatcggtcgcgccagcgtactg
ctcgatgatctgttactcgccacggcaatgcagcactttctcggtgacggcttgccacgg
acgagtgaagcttttgacgccctgtttgatcgccaccggggtgatttcatcccggcgctg
gaagatgccgatcagcggttatatcaggccatgacgggctatcagaaagtggcgaagcga
ctgaagggcaagatcagcctggccctggcctcgagcatggccgatctcaagtttcaactt
tcgaacctggtttatcccgggttcctggtggcgacaccgccggagtggctagccgaattt
ggccgttactttgaagccgcgttggttcggctggaaaagatgccccgggaaatgggacgg
gaacgggaattcctccacaccatagagcccctgtggtcccgctacgccagtaagcgagac
gaactgttgcgccagggtgtccgtgatccggagctgattgtctatcgctggatgctggag
gaatttcgggtttcctttttcgcacaacaactcggcaccgcgatgacggtttccgtcaag
cgattggaaaggcagtgggagcagacccgcatttaa
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