Micrococcus terreus: R3I42_08915
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Entry
R3I42_08915 CDS
T09505
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mteu
Micrococcus terreus
Pathway
mteu03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mteu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
R3I42_08915
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mteu03400
]
R3I42_08915
Enzymes [BR:
mteu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
R3I42_08915
DNA repair and recombination proteins [BR:
mteu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
R3I42_08915
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
Motif
Other DBs
NCBI-ProteinID:
WOO96660
LinkDB
All DBs
Position
complement(1944368..1947079)
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AA seq
903 aa
AA seq
DB search
MARADRSGRQRFQVGERTLSVSSLDKVLYPETGTTKADVMHYYLVVAEVLIPQIARRPVT
RKRWVDGVGTEENPGEVFFRKDLEDSAPDWIPTGRIQHSERTNTYPLAQEPAVLAWFAQV
AALELHTPQWRFGRNGQPRNPDRLVLDLDPGEGVGLAECAEVARWCREVLDGMGMESFPV
TSGSKGIHLYAALDGKHNAEAISKVAHELARALEADHPDLVISSMKKADRAGKVFLDWSQ
NNGAKTTVSPYSLRGRSRPWVAAPRTWEELEDSDLTQLELHQVLERVSSGLDPIGPLGWT
PDGDADADSDADGETDAPDTVAAQTLDRLATYRSMRDPAKTAEPVPADPPAPREYAEGEL
PTFVIQEHHARRLHWDFRLEHSGVLVSWAVPKGPPLDPDTNRLAVMTEDHPLEYGTFEGT
IAKGEYGAGEVTIWDSGVYEREKWREGKEVIGVLHGRPDGGLGGVPRRYALINAPGMGGG
EKNWLLHLMKDQPEPDDGPSPPAPQGTSQRAQGKQKQRKNTSAAKTPAVFTLDDLPAPML
ATAGTPTQVQQAVRDGEDWAFEMKWDGYRVIAGIGLGPDPGGTVVLSSRNGQDLTNRIPA
LTGPRGLAEVLTGAALELGGAVLDGELVALDEQGRPDFGLLQAVLGDSFRSGSDGRTSSR
RARRTAAEKAELELLRAETELRYMVFDILHLGPPGATDGARRSLLRTPYGERREILRDVV
GKAVEDGAGNGTVAVPPAHTGTLAQAERASRELGLEGVVAKRMDAVYLPGRRGSAWVKLK
TQAHQSVVVIGAREGKGGRAGGIGSLLTAVPGDDGELRYAGRVGTGFSAAQLKQIEKELR
RLERKTPPVEDVPVEDQADAWWVRPQLVGEVSLAGRTREGRLRQAVWRGWRPDLSVEDVT
WEN
NT seq
2712 nt
NT seq
+upstream
nt +downstream
nt
atggcgcgcgcagacaggtccggcaggcagcggttccaggtgggggagcggacgctgtcc
gtgtccagcctggacaaggtgctctacccggagacggggaccaccaaggccgatgtcatg
cactactacctggttgtggccgaggtgctcatcccgcagatcgcgcggcggccggtcacc
cggaagcggtgggtggacggcgtcgggaccgaggagaacccgggcgaggtgttcttccgc
aaggacctggaggactcggcgccggactggatccccaccgggcggatccagcactccgag
cgcaccaacacctacccgctggcgcaggagccggccgtgctggcctggttcgcccaggtg
gcggccctggagctgcacactccgcagtggcggttcgggcgcaacggccaaccccgcaat
ccggaccgcctggtgctggacctggaccccggggagggtgtgggcctggccgagtgcgct
gaggtggcccggtggtgccgggaggtgctggacgggatgggcatggagtccttcccggtg
acctccggctccaagggcatccacctgtacgccgccctggacgggaagcacaacgcggag
gcgatctcgaaggtcgcacacgaactggcccgcgccctggaggccgaccacccggacctg
gtcatctccagcatgaagaaggccgaccgcgccggcaaggtgttcctggattggagccag
aacaacggcgccaagaccaccgtcagcccctactccctgcgcggccgatcccgtccctgg
gtggccgccccgcgcacctgggaggagctggaggactcggatctgacccagctggagctg
caccaggtgctcgagcgggtgtccagcgggttggatcccatcggcccgctgggctggacg
ccggacggtgatgcggacgctgactctgacgcggatggggagacagacgccccggacacc
gtcgccgcccagaccctggaccgcctggccacctaccgctccatgcgcgacccggccaag
accgccgaacccgtccccgccgatccgcccgcaccccgcgaatacgccgagggggagctg
cccaccttcgtcatccaggagcatcacgcccggcggctgcactgggacttccgcctggag
cactccggtgtgctggtctcctgggcagtgcccaagggaccaccgctggacccggacacc
aaccgcctggccgtgatgaccgaggaccaccccctggagtacggcacgttcgagggcacc
atcgcgaagggcgagtacggtgccggcgaggtcaccatctgggactccggggtctacgag
cgggagaagtggcgcgagggcaaggaggtcatcggcgtcctgcacggccgtccggacggt
ggcctgggcggcgtcccccgccgctacgccctgatcaacgcccccgggatgggtggtggg
gagaagaactggctgctccacctgatgaaggaccagccagagcccgacgacggcccctca
cctcccgcgcctcagggcacgtcccagcgggcgcaggggaagcagaagcagcggaagaac
acgtcggcagcgaagacccccgccgtgttcacactggacgacctgcctgcacccatgctc
gccaccgcggggacgcccacgcaggtccagcaggccgtgcgcgacggtgaggactgggcg
ttcgagatgaagtgggacggctaccgggtgatcgccgggatcggtctgggcccggacccg
ggcggcaccgtggtgctctccagccgcaacggccaggacctcacgaaccgcatcccggcc
ctcaccggcccccgtggactggccgaggtgctcactggggcggctctcgagctgggcgga
gccgtgctggacggggagctggtggcgttggacgagcagggccggccggacttcggactg
ctgcaggccgtcctcggggacagcttccgcagcggctctgatggccgcacctcgtcccgc
cgtgcccggcgcaccgccgccgagaaggcggagctggaactgctccgtgctgagaccgag
ctgcgctacatggtcttcgacatcctgcacctgggacctcccggcgccacggacggtgcc
cgccgatccctgctgcgcaccccctacggcgagcgtcgggagatcctgcgtgacgtcgtc
gggaaagcagtggaggacggggcagggaacgggaccgtggccgtgccaccggcccacacc
gggaccctcgcccaggcggagcgggccagccgcgagctggggctggaaggcgtggtggcc
aaacggatggacgccgtctacctgcccgggcggcgggggagcgcgtgggtcaagctcaag
acccaggcgcaccagtccgtggtggtgatcggggcgcgggaaggcaagggcgggcgggcc
ggcgggatcgggtccctgctcacagccgtcccgggggacgacggtgagctgcggtacgcc
ggtcgcgtgggcaccggattcagcgccgcgcagctgaagcagatcgagaaggagctgcgg
aggctggaacggaagaccccgcccgtggaggatgtcccggtggaggaccaggccgatgcc
tggtgggtcagaccgcagctggtcggggaggtgtccctggccgggcgcactcgtgaggga
cgattgcggcaggcggtctggcgcggctggcgcccggacctgagcgtggaggacgtgacg
tgggagaactga
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