Mixta theicola: C7M52_03865
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Entry
C7M52_03865 CDS
T06402
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mthi
Mixta theicola
Pathway
mthi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mthi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
C7M52_03865 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mthi03021
]
C7M52_03865 (rpoC)
03400 DNA repair and recombination proteins [BR:
mthi03400
]
C7M52_03865 (rpoC)
Enzymes [BR:
mthi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
C7M52_03865 (rpoC)
Transcription machinery [BR:
mthi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
C7M52_03865 (rpoC)
DNA repair and recombination proteins [BR:
mthi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
C7M52_03865 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
LPD39
Motif
Other DBs
NCBI-ProteinID:
QHM77843
LinkDB
All DBs
Position
4273601..4277824
Genome browser
AA seq
1407 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVVEGGMTNLEKRQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKNMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDKVNAKGEGMVLTGPKEAERVYRAG
LAELHARVKVRITEFEKNEQGDFTPKTSLIDTTIGRAILWMIVPKGLPFSIVNQALGKKA
ISKMLNTCYRILGLKPTVIFADQTMYTGFAYAARSGASVGIDDMVIPAKKVEIITEAEAE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMENLSTETVINRDGEEEKQVSFN
SIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTLEGITMTPVIEGGDVKEPLRERVL
GRVTAEDVLKPGTADILVSRNTLLDEHWCDVLEQNSVDSVKVRSVVACETDFGVCAHCYG
RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGTIKL
TNAKSVTNSAGKLVITSRNVELKMIDEFGRTKESYKVPYGATMAKGDGEQVNAGETVANW
DPHTMPVITEVSGFIRFTDMIDGQTITRQTDELTGLSSLVVLDTAERTSGGKDLRPALKI
VDANGDDVLIPGTDMPAQYFLPGKAIVQLEDGVKISSGDTLARVPQESGGTKDITGGLPR
VADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFE
GERVERGDVISDGPESPHDILRLRGVQAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQM
LRKATIASAGSSEFLEGEQVEYSRVKIANRDLENNGKVGATYARDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRQAGETPV
TPQVSAEEATASLAELLNAGLGGSDDE
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttacttaagtttctgaaagcgcaaactaaaaccgaagagtttgatgcgatc
aagattgcgctggcctcgccagacatgatccgttcctggtctttcggtgaagtgaaaaag
ccggaaaccattaactaccgtacgttcaagcctgagcgcgacggtcttttctgcgcccgt
attttcgggccggtaaaagactacgaatgcctgtgcggtaagtacaaacgcctgaaacac
cgcggcgtgatctgtgagaagtgcggcgttgaagtgacccagactaaagtgcgccgtgag
cgtatgggccacatcgagctggcttcaccaaccgcgcacatttggttcctgaaatcactg
ccgtcccgtatcggtctgctgctggatatgccgctgcgcgatatcgaacgcgtgttgtac
ttcgaatcttatgtcgtggttgaaggcggcatgaccaacctcgaaaagcgtcagatcctg
actgaagagcagtatctggacgcgctggaagagtttggcgacgaattcgatgcgaaaatg
ggcgcggaagcgatccaggcgctgctgaaaaatatggatctggagcaggagtgcgaacag
ctgcgcgaagagctgaacgaaaccaactccgagaccaaacgtaaaaagctgaccaagcgc
atcaagctgctggaagcgttcgtacagtctggcaacaagccggagtggatgatcctgacc
gtgctgccggtgctgccgccggatctgcgtccgctggttccgctggacggcgggcgtttt
gcgacttctgacctgaacgatctctatcgtcgcgtcattaaccgtaacaaccgtctgaaa
cgtctgctggatctggctgcgccggatatcatcgtacgcaacgaaaaacgtatgctgcag
gaagcggtagacgcgctgctggacaacggccgtcgcggccgcgccatcactggctccaac
aagcgtccgttgaaatcgctggctgacatgatcaaaggtaagcagggtcgtttccgtcag
aacctgctgggtaaacgtgtcgactactccggtcgttccgttattaccgtaggtccgtac
ctgcgtctgcatcagtgcggcctgccgaagaaaatggcgctggaactgttcaaaccgttc
atctacggcaagctggaactgcgtggtcttgctaccaccatcaaagccgccaagaaaatg
gttgagcgcgaagaagctgtcgtttgggatatcctcgacgaagttatccgcgaacacccg
gtactgctgaaccgtgcgcctacgctgcaccgtctcggtatccaggcgtttgaaccggtt
ctgatcgaaggtaaagctatccagctgcacccgctggtttgtgcggcatacaacgccgac
ttcgatggtgaccagatggctgttcacgtaccgctgacgctggaagcccagctggaagcg
cgtgcgctgatgatgtctaccaacaacattctgtctccggcgaacggcgaaccgatcatc
gttccgtctcaggacgttgttttgggtctctactatatgacccgcgacaaagtgaacgcc
aaaggcgaaggcatggtgctgaccggtccgaaagaagctgagcgtgtctatcgcgctggc
ctggccgagctgcatgcgcgcgttaaagtgcgtatcactgagtttgaaaaaaatgagcag
ggcgatttcacgccgaaaaccagcctgatcgataccactatcggtcgcgctattttgtgg
atgatcgtacctaaaggtctgcctttctccatcgtcaaccaggcgctgggtaaaaaggcg
atctccaaaatgctgaacacctgttaccgcattctgggcctgaaaccgaccgttatcttt
gctgaccagaccatgtacaccggttttgcctacgcagcccgttcaggcgcctccgtaggt
atcgatgatatggtgatcccggcgaagaaagtggaaatcatcaccgaagcggaagcggaa
gtggctgagatccaggaacagttccagtctggcctggtaaccgctggcgaacgctataac
aaagttatcgatatctgggccgcggcgaacgaacgcgttgctaaagcgatgatggaaaac
ctctctaccgaaacggtgatcaaccgtgacggcgaagaagagaaacaggtttccttcaac
agtatctttatgatggccgactccggtgcgcgtggttccgccgctcagattcgtcagctg
gcgggtatgcgtggcctgatggcgaaaccggatggctccatcattgaaacgccaatcacc
gcgaacttccgtgaaggtctgaacgtactccagtacttcatctccacgcacggtgcgcgt
aaaggtctggcggataccgcgctgaaaacggcgaactccggttatctgacgcgtcgtctg
gttgacgtagcgcaggatctggtagtaaccgaagatgactgcggcaccctcgaaggcatc
accatgacgccggttatcgaaggcggcgacgtgaaagagccgctgcgtgagcgcgtactg
ggccgtgttacggcggaagacgtgctgaaaccgggcacggcggatattctggtttcccgt
aacaccctgctcgatgagcactggtgtgacgtgctggaacagaactctgtcgatagcgta
aaagttcgctctgttgttgcctgtgaaaccgacttcggcgtttgtgcgcactgctacggt
cgtgacctggcgcgtggccatatcatcaacaaaggtgaggccatcggcgttatcgcggca
cagtccatcggtgagccgggtactcagctgacgatgcgtaccttccacatcggtggtgcg
gcatcgcgtgcggctgctgaatccagcattcaggtgaaaaacaaaggtaccatcaagctg
accaacgctaagtcggtaaccaactccgctggtaagctggtgattacttcccgtaacgtt
gaactgaaaatgatcgacgaattcgggcgcaccaaagaaagctataaagtgccttacggc
gcaaccatggcgaaaggtgatggtgagcaggtcaacgccggtgaaacggtagcgaactgg
gatccgcacaccatgccggttatcaccgaagtgagcggtttcatccgtttcaccgacatg
atcgacggccagaccattacccgtcagacagatgagctgaccggtctgtcttcactcgtg
gtgctcgataccgcagagcgtacctctggtggtaaagacctgcgtccggcgctgaaaatc
gttgacgctaacggcgatgatgttctgattccgggcaccgacatgccggcacagtacttc
ctgccgggcaaagcgattgtgcagctggaagatggcgtgaaaatcagctctggtgatacc
ctggcgcgtgtaccgcaggaatctggcggtaccaaggatattaccggtggtctgccgcgc
gttgctgacctgttcgaagcgcgtcgtccgaaagaacctgcgatcctggctgaaatcagc
ggtatcgtctccttcggtaaagagaccaaaggtaaacgtcgtctggtaattacgccggtt
gacggcagcgatccgtacgaagagatgattccgaagtggcgtcagcttaacgtattcgaa
ggtgagcgcgtggaacgtggcgacgtaatctccgatggtccggaatctccgcatgacatt
ctgcgtctgcgtggcgttcaggctgtgacccgttatatcgttaacgaggtgcaggacgtt
tatcgtctgcagggcgttaagattaacgataagcacatcgaagttatcgtgcgtcagatg
ctgcgtaaagcaaccatcgccagcgcgggcagctccgagttcctggaaggcgagcaggta
gaatactcacgcgtgaagattgccaaccgcgatctggaaaacaacggcaaagtgggcgca
acttacgctcgcgacctgttgggtatcaccaaagcatcgctggcaaccgaatcgttcatc
tctgccgcatcgttccaggaaacaacgcgtgtcctgaccgaagcagcggtagcgggcaag
cgcgacgaactgcgcggcctgaaagagaacgttatcgtgggtcgtctgatcccagccggt
accggttacgcttaccatcaggatcgtatgcgtcgccgtcaggcgggcgaaaccccggtt
acgccgcaggttagcgcggaagaagccactgccagcctggcagagctgcttaatgcgggc
ctcggcggcagcgacgacgaataa
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