Mycobacterium tuberculosis CCDC5180: CCDC5180_1148
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Entry
CCDC5180_1148 CDS
T01992
Name
(GenBank) cold-shock DEAD-box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mtl
Mycobacterium tuberculosis CCDC5180
Pathway
mtl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mtl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CCDC5180_1148
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mtl03019
]
CCDC5180_1148
03009 Ribosome biogenesis [BR:
mtl03009
]
CCDC5180_1148
Enzymes [BR:
mtl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CCDC5180_1148
Messenger RNA biogenesis [BR:
mtl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CCDC5180_1148
Ribosome biogenesis [BR:
mtl03009
]
Prokaryotic type
rRNA helicases
CCDC5180_1148
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
HEM4
FtsK_4TM
B_solenoid_dext
Motif
Other DBs
NCBI-ProteinID:
AEJ49985
LinkDB
All DBs
Position
1396046..1397824
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AA seq
592 aa
AA seq
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MVTTHRAPYRHRARGCGRRGRVTTKLDGLMAFPEYSPAASAATFADLQIHPRVLRAIGDV
GYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPMLSKIDITSKVPQALVLVPTR
ELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAGLRRGAQVVVGTPGRMIDHLERAT
LDLSRVDFLVLDEADEMLTMGFADDVERILSETPEYKQVALFSATMPPAIRKLSAKYLHD
PFEVTCKAKTAVAENISQSYIQVARKMDALTRVLEVEPFEAMIVFVRTKQATEEIAEKLR
ARGFSAAAISGDVPQAQRERTITALRDGDIDILVATDVAARGLDVERISHVLNYDIPHDT
ESYVHRIGRTGRAGRSGAALIFVSPRELHLLKAIEKATRQTLTEAQLPTVEDVNTQRVAK
FADSITNALGGPGIELFRRLVEEYEREHDVPMADIAAALAVQCRGGEAFLMAPDPPLSRR
NRDQRRDRPQRPKRRPDLTTYRVAVGKRHKIGPGAIVGAIANEGGLHRSDFGQIRIGPDF
SLVELPAKLPRATLKKLAQTRISGVLIDLRPYRPPDAARRHNGGKPRRKHVG
NT seq
1779 nt
NT seq
+upstream
nt +downstream
nt
gtggtgaccacacaccgggcaccgtaccgccatcgggcccgcgggtgcggtaggcgtggc
cgggtcaccactaaacttgacggcctgatggccttcccggaatattcgcctgcggcgtcc
gctgcgacgtttgctgacctgcagattcatccccgcgtcttgcgggcgatcggcgacgtc
ggttacgagtcaccgacggctatccaggcggctacgatcccggcgttgatggcaggctcc
gacgtggtggggctggcgcagaccggcaccggcaagacggcggcatttgcgattccgatg
ctgtccaagatcgacatcaccagcaaggtgccccaggcgctggtgctggtgcccacccgg
gagctggctctgcaggtggccgaggcgttcggccgctacggtgcctatctgtcgcaactc
aacgtgctgccgatctacggcggatcgtcgtatgccgtgcaactggccggattgagacgc
ggcgcgcaggtggtggttggcacccccggtcgtatgatagaccatctcgaacgggcgacc
ttggacctgtcgcgggtggactttctagtgctcgatgaggccgatgagatgctgaccatg
ggtttcgccgacgacgttgagcgcattctgtccgagacccccgaatacaagcaggtcgcc
ctgttttccgcgaccatgccgccggcgatccgcaaactcagcgccaagtatctgcacgat
ccgttcgaagtcacttgtaaggcgaaaaccgctgtggccgagaatatttcgcagagctac
attcaggtagcacggaagatggacgcgctcaccagagtgctcgaagtcgagccgttcgag
gcgatgatcgtctttgtccgcaccaagcaggcgaccgaggagattgccgaaaagctgcgt
gcccgagggttttccgcggctgccatcagcggtgacgtcccgcaggcgcagcgggagcgg
accatcacggcgctgcgggacggcgacatcgatatcctggtcgccaccgatgtggcggcg
cgcggactcgacgtggagcggatatcacacgtgcttaactacgacatcccgcacgacacc
gagtcctacgtacaccggatcgggcgcaccggcagggccgggcgttcgggagccgcgctg
atattcgtctcgccacgggagcttcacctgctcaaggcgatcgaaaaggctacgcggcaa
acgcttaccgaggcgcaattgcccaccgtcgaggatgtcaacacccagcgggtggccaag
ttcgccgattccatcaccaatgcgctgggcggtccgggaatcgagctgttccgccgactg
gtcgaggagtatgaacgcgagcatgatgtcccgatggctgacatcgccgcggcactggcc
gtgcagtgccgcggcggtgaggcattcctgatggcacccgacccgccgctttcgcggcgc
aaccgcgaccagcgtcgggaccgtccgcaaaggcccaagcgtagaccggacttgaccacc
taccgcgtcgccgtcggcaagcggcacaagatcggtccaggcgccatcgtcggcgccatc
gccaatgagggtgggctgcaccgcagcgacttcggtcagatccgtatcgggccagacttc
tcgctagtagaattgccggcgaagctgccccgcgcgacgctcaaaaagcttgcacagacc
cgtatctcgggtgtgctgatcgaccttcggccataccggccgcccgacgcggcgcgccgg
cataatggcggcaaaccacggcggaaacacgtcggatga
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