Methylosinus trichosporium: CQW49_17280
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Entry
CQW49_17280 CDS
T05155
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mtw
Methylosinus trichosporium
Pathway
mtw03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mtw00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CQW49_17280 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mtw03021
]
CQW49_17280 (rpoC)
03400 DNA repair and recombination proteins [BR:
mtw03400
]
CQW49_17280 (rpoC)
Enzymes [BR:
mtw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CQW49_17280 (rpoC)
Transcription machinery [BR:
mtw03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CQW49_17280 (rpoC)
DNA repair and recombination proteins [BR:
mtw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CQW49_17280 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
ApbA_C
DUF6744
Motif
Other DBs
NCBI-ProteinID:
ATQ69443
UniProt:
A0A2D2D369
LinkDB
All DBs
Position
3639641..3643828
Genome browser
AA seq
1395 aa
AA seq
DB search
MNQQEVMNLFNPVVQPQAFDQIQISIASPEKILSWSFGEIKKPETINYRTFKPERDGLFC
ARIFGPIKDYECLCGKYKRMKYKGVICEKCGVEVTLARVRRDRMGHISLAAPVAHIWFLK
SLPSRIGLLLDMTLKDLERILYFESYITIDPGLTPLKERQLLTEDEYLRAQDEYGQDNFT
AMIGAEAIRKLLESMDLEGIAARLRQEIAEATTELKPKKLAKRLKIIEAFIQSGNKPEWM
ILKEIPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIIRNEKR
MLQEAVDALFDNGRRGRVITGANKRPLKSLADMLKGKQGRFRQNLLGKRVDYSGRSVIVV
GPELKLHQCGLPKKMALELFKPFIYSRLDAKGHSATVKQAKKLVEKEKPEVWDILDEVIR
EHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQ
LEARVLMMSTNNILHPANGQPIIVPSQDIVLGLYYLTLERDGEPGQGMALADQGEIEHAI
ASKAITLHTKIKGRAWTYDENGKRVRKIFDTTPGRLILGQLLPKNRKIPFDAANKLMTKK
EISNMIDTVYRNCGQKETVIFCDRIMSLGFREAFKAGISFGKDDMVVPETKERIVAETRA
ATKEYEQQYNDGLITQGEKYNKVVDAWAKCTDKLAEEMMIRISAVRKDEHGRDMPINSIY
MMSHSGARGSPAQMKQLAAMRGLMAKPSGEIIESPIISNFKEGLTVLEYFNSTHGSRKGL
SDTALKTANSGYLTRRLVDVAQDSIITTVDCGSDKGIRMRAIIDAGQIVATLASRILGRT
TAEELRDADGNVIVPVGEMIEEWHIERINAAGIQEVKIRSVLTCEAKNGVCAKCYGRDLA
RGTPVNMGEAVGVIAAQSIGEPGTQLTMRTFHIGGAATIADQSFMESNFEGTVHLRNRHV
ARNSDGDLMVMARNVAIVIVGPDGVERAVNRVQYGARLKVDDGDKIKRGQRMAEWDPYTR
PIISEVDGVIGFEDLVEGQSMAETADESTGITKRMVMDYRLNLRSASLKPSIVIKTADGK
IAKLQRGGDARYTLPVDSIIAVEPGSTIKAGDIVARISVESAKTRDITGGLPRVAELFEA
RRPKDHAIIAEISGTVQFGRDYKNKQRLSIVPHEEGAEPVEYLIPKGKHIHLQDGDVVEK
GDYIVDGNPAPHDILAIKGVEELAAYLVNEIQEVYRLQGVNINDKHIEVIVRQMLQKVDI
VDAGDTGFLDGEQVDQTELEEANARMLEEGKKLATGTPVLLGITKASLQTRSFFSAASFQ
ETTRVLTEAAVNGKVDPLVGLKENVIVGRLIPAGTGAAMSKFRGIATGRDDLIITQRQAE
ADARPTPQLPPAAAE
NT seq
4188 nt
NT seq
+upstream
nt +downstream
nt
atgaatcagcaagaggtcatgaatctcttcaatccggtcgtccagccgcaggcgttcgac
cagattcagatttcgatcgcgagcccggaaaaaatcctctcctggtcgttcggcgagatc
aagaagccggagacgatcaactaccgcaccttcaagccggagcgcgacggcctgttctgc
gcgcgcatctttggtccgatcaaggactacgagtgcttgtgcggcaagtacaagcgcatg
aaatacaagggcgtcatctgcgagaaatgcggcgtcgaggtcacgctcgcacgcgttcgg
cgcgaccgcatgggccatatctcgctcgccgcgcccgtcgcgcatatctggttcttgaag
tcgctgccttcgcgcatcggccttctgctcgacatgacgctgaaggacctcgagcgcatc
ctctatttcgagtcctacatcaccatcgatccgggcctcacgcctttgaaggagcgccag
ctcctcaccgaggatgagtatctgcgcgcccaggacgaatatgggcaggacaatttcacc
gccatgatcggcgcggaggcgatccgcaagctgctcgagtcgatggatctcgagggcatc
gccgcgcggctgcgccaggagatcgccgaggcgacgaccgagctgaagcccaagaagctc
gccaagcgcctgaagatcatcgaggccttcatccagtccggcaacaagccggagtggatg
atcctgaaggaaatcccggtcattccgccggatctgcgtccgctggtgccgctcgacggc
ggccgtttcgcgacctcggatctgaacgatctctaccgccgcgtcatcaaccgcaacaac
cgcctgaagcggctgatcgagctgcgcgcgccggacatcatcatccgcaacgagaagcgc
atgcttcaggaggcggtcgacgctctgttcgacaacggccgccgcggccgcgtcatcacc
ggcgccaacaagcgcccgctgaagtcgctcgccgatatgctgaagggcaagcagggccgt
ttccgccagaatctgctcggcaagcgcgtcgattattccggccgctcggtcatcgtcgtg
ggcccggagctcaagctccatcaatgcggcctgccgaagaagatggcgctcgagctgttc
aagcccttcatctattcgcgcctcgacgcgaaggggcattcggccacggtgaagcaggcc
aagaagctggtcgagaaggagaagccggaagtttgggacatcctcgacgaggtgatccgc
gagcatccggtgctgctcaaccgcgcgccgacattgcaccgtctcggcattcaggccttc
gagccggtgctgatcgagggcaaggcgatccagctgcatccgctcgtctgcgcggccttc
aacgccgatttcgacggcgaccagatggccgtgcatgtgccgctgtcgctggaggcgcag
ctcgaagcgcgcgtcctgatgatgtcgacgaacaatattctgcatccggccaatggtcag
ccgatcatcgtgccgtcgcaggacattgttctcggcctctattatctgacgctggagcgc
gacggcgagccggggcagggcatggcgctcgccgatcagggcgagatcgagcacgcgatc
gcctccaaggcgatcacgttgcacaccaagatcaaaggccgcgcctggacctatgacgag
aacggcaagcgcgtgcggaaaatcttcgacacgacgcccgggcgcctgatcctcggccag
ctgttgcccaagaaccgcaagatccccttcgacgcagccaacaagctgatgacgaagaag
gagatctccaacatgatcgacaccgtctaccgcaactgcggtcagaaggagacggtgatc
ttctgcgaccgcatcatgtcgctcggcttccgcgaggcgttcaaggccggcatctccttc
ggcaaggacgacatggtcgtgccggagacgaaggagcgcatcgtcgccgagacgcgcgcc
gccaccaaggaatatgagcagcagtacaacgacggcctcatcacgcagggcgagaaatac
aacaaggtcgtcgacgcctgggccaagtgcacggataagctcgccgaggagatgatgatt
cgcatctccgcggtgcgcaaggacgagcacggccgcgacatgccgatcaactcgatctac
atgatgtcgcattcgggcgcgcgcggctcgccggcgcagatgaagcagctcgcggcgatg
cgcggcctgatggccaagccgtcgggcgagatcatcgagagcccgatcatctcgaacttc
aaagagggcctcaccgttctcgaatacttcaactcgacgcacggctcccgcaagggcttg
tcggacaccgcgttgaagaccgcgaactcgggctatctcacgcgtcgcctcgtcgacgtg
gcgcaggattcgatcatcaccacggtcgattgcggctccgacaagggcatccgcatgcgg
gcgatcatcgacgccggccagatcgtcgcgacgctcgcctcgcgcattctcggccgcacg
acggcggaggagctgcgtgacgcggacggcaatgtgatcgtgccggtcggcgagatgatc
gaggagtggcatatcgagcgcatcaacgccgccggcattcaggaggtgaagatccgttcg
gtgctgacctgcgaggccaagaacggcgtttgcgcgaaatgctatggacgcgatctcgcg
cgcggcacgccggtcaacatgggcgaggcggtcggcgtcatcgcggcgcagtcgatcggc
gagccgggcacccagctcaccatgcgcaccttccacatcggcggcgcggcgacgatcgcc
gaccagtccttcatggagtcgaacttcgaaggaacggtccatctgcgcaaccgccatgtg
gcgcgcaactcggacggcgatctgatggtgatggcgcgcaatgtcgcgatcgtcatcgtc
gggccggacggcgtcgagcgcgcggtcaatcgcgtgcaatatggcgcgcggctcaaggtc
gacgacggcgacaagatcaagcgcggccagcgcatggcggaatgggatccctacacgcgt
cccatcatcagcgaggtcgacggcgtgatcggcttcgaggacctcgtcgaaggccagtcg
atggcggagacggcggacgaatccaccggcatcaccaagcgcatggtcatggactatcgt
ctcaacctgcgctccgcgagcctgaagccgtcgatcgtcatcaagacggcggacggcaag
atcgccaagctgcagcgtggcggcgacgcccgctacacgctgccggtcgactcgatcatc
gcggtcgagccgggctcgacgatcaaggccggcgacatcgtcgcgcgtatctcggtcgag
agcgccaagacgcgcgacatcaccggcggtctgccgcgcgtcgccgagctgttcgaggcg
cgccgtccgaaggatcacgcgatcatcgccgagatctccggcacggtgcaattcggccgc
gactataagaacaagcagcgtctctccatcgtcccgcacgaggagggggcggagccggtc
gaatatctcatccccaaaggcaagcacatccatcttcaggacggcgacgtcgtggagaag
ggcgattacatcgtcgacggcaatccggcgccgcacgacattctggcgatcaagggcgtg
gaggagctcgcggcttatctcgtcaacgagatccaggaggtctaccgactgcagggcgtc
aacatcaacgacaagcacatcgaggtgattgttcgtcagatgctgcagaaggtcgacatc
gtcgacgccggcgacaccggcttcctcgatggcgagcaggtggatcagaccgagctcgag
gaggcgaacgcccggatgctggaagagggcaagaagcttgcgacgggaacgccggtgctg
ctcggcatcaccaaggcgtcgctgcagacgcgttccttcttctcggcggcctcgttccag
gagacgacgcgcgtgctgaccgaagccgcggtgaacggcaaggtcgatccgctggtcggc
ctcaaggagaatgtgatcgtcggccggctcattcccgccggcaccggcgcggcgatgtcg
aagttccgcggaatcgccacgggccgcgacgatctcatcatcacgcagcgccaggccgag
gccgacgcacggccgacgccgcagcttccacccgccgcagcggagtga
DBGET
integrated database retrieval system
