Microbulbifer variabilis: MJO52_12310
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Entry
MJO52_12310 CDS
T08656
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mvb
Microbulbifer variabilis
Pathway
mvb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mvb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MJO52_12310 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mvb03400
]
MJO52_12310 (mfd)
Enzymes [BR:
mvb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MJO52_12310 (mfd)
DNA repair and recombination proteins [BR:
mvb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MJO52_12310 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
AAA_30
ERCC3_RAD25_C
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
USD19864
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All DBs
Position
2755384..2758863
Genome browser
AA seq
1159 aa
AA seq
DB search
MTDIQPLTPPKFHSTTDRQFWGQLHGAAAALAILNAARNSQSPTLLITRDSLEAHRLEVQ
LKFFNKARRDAASEGDFEIFHFPDWEILPYDTFSPHQDIISDRLATLYRLPQMGSGIVIV
PVSTLMHRLPPSDYVAGNALILNEGQQFDIDIQRRLLEQAGYHCVDTVYEHGEFAVRGSL
MDIFPMGSPLPYRIDLFDDEIESLRTFDPETQRTVDKVETIHLLPAREFPMHKAGLSGFL
QNWHEQFQVDPSLVPIYQDISAGIAPAGIEYYLPLFFDNNCASLFDYLPENSQAFIQGNV
QAPVDSFWREVSNRYESRRGDLTRPILQPRQILLDIDEFNGALKSMPRAIFSAETLPDAQ
GNYNFATQMPPTLPVDGKAEQPMAALESYLMEYSGRVLFCAESSGRREALLELLKGIRLN
PPTYASWEEFLQSSESIGITVAPLDQGLLLTDPAVNLIAEPQLFGERVLQQRRRKKAKDD
ADNAVKNLAELRIGAPVVHIDQGVGRYRGLQHLEIDGQPAEFLTLEYANEAKLYVPVASL
HLISRYSGADEALAPLHKMGSEQWQKAKRKAAEKVRDAAAELLDIYARREARVGHAFADP
KLAYREFSAGFPFEETPDQQQAIEAVIGDMRSKKPMDRLVCGDVGFGKTEVAMRAAFVAA
HAGKQVAMLVPTTLLAQQHFQSFQDRFADWPINIEVISRFRSGKEVDSVKEKVASGKVDI
LVGTHKLLQSDLDFQNLGLLIIDEEHRFGVRQKERLKSLRAEVDILNLTATPIPRTLNMA
MAGIRDLSVIATPPARRLSVKTFVRERDDALVKEAILREILRGGQVYFLHNEVKSIERIA
RELQELIPEARIGIGHGQMRERELEQVMSDFYHKRFNVLVCTTIIETGIDVPTANTILIE
RADKFGLAQLHQLRGRVGRSHHQAYAYLLTPNKRSMTGDAVKRLEAISEAQDLGAGFTLA
THDLEIRGAGELLGEEQSGQIQSVGFNLYMEMLDRAVKAIREGRTPNIDDPLESPAVDVN
LRVPALIPEDYLPDVHGRLMMYKRIANAVDRQQLKELQVEMIDRFGLLPEPVKHLFRTTE
IKLKADKMGIRKLEASAARGRIEFAENTQVDPLTLVKLVQTQPGRYQLAGANQLNFSLDE
EGADRKLQEISEVLERLAQ
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
atgaccgatatacagcccctgactccccccaaatttcacagcaccaccgaccggcaattc
tggggacaacttcacggcgcagcggccgcactcgccattctgaatgctgctcgcaacagt
caatcccccacactgctgatcactcgtgacagcctcgaggcgcaccgcttagaggtacag
ctgaaattttttaacaaagcgcggagagatgcagcctcagagggcgactttgagatcttt
cattttccagactgggaaattctcccctacgataccttctccccacaccaggatattatc
tcggaccgcctggcaaccctctaccgcctgccgcaaatggggagcggtatcgtcatagtg
cccgtgagcaccttaatgcatcgcctgccgccaagtgattacgtagccggcaatgcgctg
atcctcaatgaggggcaacaatttgacattgatatccagcgtcgcctgttagagcaggca
ggctatcactgtgtagataccgtctatgaacacggtgagtttgccgtgcgcggctcactc
atggatattttccctatgggcagtccactgccctatcgcatcgatctattcgacgatgaa
attgaatccctgcgcacctttgacccagaaacccaacgcacagtggataaggtggaaact
attcacctgctgcccgcgagagagttcccaatgcacaaggccggtctttccggctttctg
cagaactggcatgaacaattccaggtagaccccagtcttgtgcccatctaccaggatatc
agtgcaggaattgccccagcgggtatcgaatactacctgccactatttttcgataacaat
tgcgcgagcctattcgactaccttcccgagaacagccaggcttttatccaaggaaatgtg
caagcacctgttgatagcttttggcgcgaggtcagcaaccgctatgagagccgccgtggc
gatctgacccgcccaattcttcaaccacgccagattctgctggatatcgatgaattcaat
ggcgcgctcaaatcgatgccaagggccatcttctctgcagagacgctgcccgatgcccag
ggcaattacaactttgccacccaaatgcctccaaccctgccggtagacggcaaggctgag
cagccaatggccgccctggaaagttacctgatggagtactccgggcgagtgctcttctgt
gccgaaagcagtgggcgccgtgaggcattactggagcttttaaaaggtattcgcctgaat
cccccaacctatgccagctgggaagaattcctccaaagcagtgaatccatcgggatcacc
gtagcgcccctggatcagggcctgttactgactgatccagccgtcaacctgatcgcggaa
ccgcagttatttggcgagcgggtgctacaacagcgccgccgcaaaaaagccaaagatgat
gcagacaatgcagtcaaaaacctggcggaattgcgtatcggcgccccggtagtgcatatc
gatcaaggagtgggacgctaccgcggcctgcaacacctggaaatcgatggacagcctgcc
gagttcttgactctggaatacgccaatgaagccaagctctatgttcccgtagccagcctg
cacctgatcagccgttactccggtgccgatgaagccctggctccactgcataaaatgggc
agcgaacagtggcagaaagccaagcgcaaagccgccgaaaaagttcgtgatgccgctgcc
gaactcctggatatctatgctcgtcgtgaagcccgtgtcggtcacgcttttgccgacccc
aagctggcttatagagaattttcagccggcttccccttcgaggaaacaccagaccagcag
caggccattgaagccgtgattggcgacatgcggtccaaaaagcccatggaccgactggtg
tgtggcgatgtgggctttggtaaaaccgaagtcgctatgcgtgcggcctttgtcgccgcc
catgccggcaagcaagtggccatgctggtacccaccactctgttagcgcagcaacatttc
cagtctttccaagatcgcttcgccgactggcccatcaatattgaagtgatctcccgcttc
cgttcaggcaaagaagtggacagcgtgaaagagaaggtagccagtggcaaagtggatatc
cttgtcggcacccataaacttctacagagcgacctggactttcagaatctcggactgctg
attatcgacgaagaacaccgctttggggtacgccagaaagagcgcctcaagagcctgcgc
gccgaagtggatatcctcaacctaaccgccacaccgatcccgcgcactttaaatatggca
atggccggcattcgcgatctatcagtcatcgccacgccgccggcgcgacgcctctctgta
aaaactttcgtgcgcgagcgcgacgatgcactggtgaaggaggccatactgcgggagatc
ctccgtggcggccaggtgtatttcctgcacaatgaagtgaaaagcattgagcgtatcgcc
cgagaattacaggagctgattcccgaggcccgcatcggtatcggtcacggtcagatgcgt
gagcgcgaactggagcaggtcatgagtgacttttaccacaagcgctttaatgttttggtg
tgtaccaccattatcgaaaccggtatcgacgtcccaactgctaacacaatactgatcgaa
cgcgcagacaaatttggcctggcccagctgcaccagctgcgtggtcgtgtggggcgatcc
caccaccaagcctatgcctacttgctgacccccaacaaacgctcaatgactggcgacgcg
gtcaagcggctggaagcaatcagtgaagcccaggatcttggggctggattcaccctggcc
acccacgatctggaaatccgcggcgccggcgagttacttggtgaggaacagagcgggcaa
atccagagtgtcggcttcaacctgtatatggagatgctcgaccgcgcggtgaaagccatt
cgcgaggggcgtactcccaatatcgacgaccccctggagtccccggctgtagatgtcaat
ctgcgggtaccggcgctgattccagaggactacttgccggatgtccatggccgcctaatg
atgtacaaacgtatcgccaatgccgttgatcgccaacaactgaaggagttacaggtggag
atgatcgaccgctttggtctactgccagaaccggtcaaacacctgttccgcaccaccgaa
ataaaactgaaggccgataaaatgggcattcgcaaattggaagcctccgccgctcgaggc
cgcatcgagtttgccgaaaatacccaagtagaccccctcaccctggtgaaattggtgcaa
acacagccgggacgctaccagctggccggcgccaaccagctgaacttcagccttgatgaa
gagggcgccgaccgcaagctacaggaaataagcgaagtgctggagcgcttagcccagtga
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