Mannheimia varigena USDA-ARS-USMARC-1296: X808_8460
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Entry
X808_8460 CDS
T03027
Name
(GenBank) UvrABC system protein A
KO
K03701
excinuclease ABC subunit A
Organism
mvi
Mannheimia varigena USDA-ARS-USMARC-1296
Pathway
mvi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mvi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
X808_8460
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mvi03400
]
X808_8460
DNA repair and recombination proteins [BR:
mvi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
X808_8460
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
X808_8460
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_DNA-bind
UvrA_inter
ABC_tran
SMC_N
AAA_29
AAA_16
nSTAND1
RsgA_GTPase
AAA_22
nSTAND3
AAA_21
DnaJ_CXXCXGXG
AAA_23
AAA_25
BCA_ABC_TP_C
Viral_helicase1
cobW
NACHT
ATPase_2
Motif
Other DBs
NCBI-ProteinID:
AHG75369
UniProt:
W0Q913
LinkDB
All DBs
Position
898072..900900
Genome browser
AA seq
942 aa
AA seq
DB search
MQHIDIRGARTHNLKNINLILPRDKFIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY
ARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTVTEIHDYLRLLFARVGEPRC
PDHDVPLAAQTISQMVDRVLEEPEGKRLMLLAPVVKDRKGEHVKLLENLTASGYLRARID
GEICDLSDPPALELQKKHTIEVVVDRFKVRDDLATRLAESFETALDLSGSTAIIADMDDP
NADEIVFSSSFACPHCGYSLQELEPRLFSFNNPAGACPSCDGLGVEQFFDEKKVVQNYDV
SLAAGAIKGWDRRSFYYFGLLKAIAEHYGFDLETPFGQLSKKHQNLILNGTKEEIEFVYV
NDRGDKVKRKHAFEGVLNNMARRYKETESNSVRDELAKYINTRPCVECEGSRLRREARYV
FLDKTNLPMVSEKSIGEALAFFEEIKLSGQREKIAEKILKEIRERLQFLVNVGLNYLSLS
RSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLNTLIHLRNLGNTV
IVVEHDEDAIRAADHIVDIGPGAGVHGGQVIAQGTAKEIMQIEESITGQFLSGKQKIEIP
AQRVAYDSAKVLTLSGASGNNLKKVKLEIPVGLFTCITGVSGSGKSTLINDTLFPLAQNA
LNRAENSDVAPYETIDGLAHFDKVIDIDQSPIGRTPRSNPATYTGLFTPIRELFAGTQEA
RARGYNVGRFSFNVRGGRCEACQGDGVIKVEMHFLPDVYVPCDHCKGKRYNRETLEIRYK
GKTIHQVLEMTVEEAREFFVPVPMIARKLQTLMDVGLSYIRLGQSSTTLSGGEAQRVKLA
TELSKRDTGKTLYILDEPTTGLHFADIKQLLGVLHRLRDQGNTIVVIEHNLDVIKTADWI
VDLGPEGGSGGGEIIATGTPEQVAKDKRSHTARFLKEILSKG
NT seq
2829 nt
NT seq
+upstream
nt +downstream
nt
atgcaacatattgatattcgtggagcaagaacccacaacttaaaaaacatcaatttaatc
ttaccgagagataaatttattgtcatcacagggctttccggttcaggtaaatcttcccta
gcttttgatacactttatgcagaggggcaacgccgttatgtagaatccctttctgcctat
gctcgccagttcctttctttaatggaaaagcctgatgtcgatcatattgaagggctttcg
cctgcgatttcgattgagcagaaatctacttctcacaaccctcgctcaacggtaggaacg
gttacggaaatccacgactatctgcgtttattgtttgctcgtgtgggcgaaccacgttgc
cctgatcacgatgtgccgttagctgcgcaaactatttcgcaaatggtggatagggtgctg
gaagagcctgaaggtaaaaggttaatgttgcttgccccagtagtaaaagatcgtaaaggc
gaacacgtaaaattattggaaaatttgaccgctagtggctatctgcgtgccagaattgac
ggcgaaatttgtgatttatcagacccaccagcattagaacttcagaaaaaacacaccatt
gaagtagtggtagatcgctttaaagtaagagatgatcttgcaacacgtttagccgaatca
tttgaaactgcattagatttatcaggctcaactgcgattattgcggatatggatgatcca
aatgcggacgaaatcgtcttttcatcgagctttgcttgcccgcattgtggctattcatta
caagaattagaaccacgtttattttcattcaataaccctgctggagcttgcccgagttgt
gatggcttaggcgtagagcagttttttgatgaaaagaaagtggtacaaaattacgatgtt
tcattagctgcaggagcaattaaaggctgggatcgccgtagtttttactatttcgggcta
cttaaagccattgctgaacactacggttttgatttagaaacaccattcggacagttatcg
aaaaagcatcaaaatcttattctaaatggcacaaaagaagagattgagtttgtttacgtt
aatgacaggggcgataaagtcaaacgcaaacacgcttttgaaggtgtgttgaataatatg
gctcgccgctataaagaaaccgaatctaactcagtgcgagatgaattagcgaaatatatc
aacactcgcccttgcgtagagtgtgaaggatctcgtttacgccgtgaagctcgctatgtt
ttccttgataaaactaacctaccgatggtatctgaaaaaagtattggcgaggcgttggct
ttctttgaggagattaagttatcagggcaaagagagaaaattgcggaaaaaattctaaaa
gagatccgtgagcgtttacagttcttggtaaatgtgggcttgaattatctttcgctttct
cgttcggcggaaaccctttcaggtggcgaggcacaacgtatccgtcttgccagtcaaatt
ggggctggtttagtgggcgtgatgtatgtgttagatgaaccttccattggtttgcaccaa
cgtgataacgaacgtttgctaaatacgcttattcatttgcgtaacttaggtaacaccgtg
attgtggttgaacacgatgaagatgctattcgagccgctgatcatattgtggatatcgga
ccgggtgcaggggtgcacggtgggcaagtgatcgcacaaggaacggctaaagaaattatg
cagattgaagagtcaataacaggacaatttctttcaggcaaacagaaaattgaaattcca
gcccaacgtgtggcttacgactcagccaaagtcttaactctttcaggggcaagcggcaat
aacttgaagaaagtgaagttggaaattcctgtcggcttgtttacttgtatcacgggcgtg
tctggttcgggtaaatcaactctaattaatgataccttattcccattggctcaaaatgcg
ttaaaccgtgcagaaaatagcgatgttgctccttatgaaactattgatggtttagctcat
tttgataaagtgatcgacatcgatcaaagtccgatcggacgaacccctcgctcaaatcca
gctacttacacggggctatttaccccaattcgtgaattgtttgcaggtacgcaagaggca
cgggcaagaggctataacgtagggcgttttagttttaatgtccgtggtggtcgctgtgaa
gcctgtcaaggtgatggtgtaatcaaggttgaaatgcacttcttaccagatgtttatgta
ccttgcgatcattgtaaaggcaaacgctataaccgcgaaacccttgaaattcgctataaa
ggtaaaaccattcaccaagtgttagaaatgacggtggaagaggcgagagagtttttcgta
ccggtaccgatgattgctcgtaaactacaaaccttgatggacgttgggttatcttatatc
cgtttaggtcaatcttctactaccctttcaggtggagaagcacaacgtgtgaaacttgcc
actgagctttcaaaacgtgatacaggcaaaaccctttatattttagacgaaccaaccaca
gggttacattttgctgatatcaaacagcttctaggcgtgttgcaccgcctgcgtgatcaa
ggtaataccattgtggtgatcgaacataatttagatgtgattaaaaccgcagactggatt
gttgatctaggtcctgaaggtggtagcggcggcggtgagattatcgccacaggcacaccg
gaacaagtagctaaagacaaacgctcccatactgcaaggttcctaaaagagatcttatca
aaaggctaa
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