Mycobacterium xenopi: MYXE_27180
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Entry
MYXE_27180 CDS
T06649
Symbol
lig_1
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mxe
Mycobacterium xenopi
Pathway
mxe03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mxe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
MYXE_27180 (lig_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mxe03400
]
MYXE_27180 (lig_1)
Enzymes [BR:
mxe01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
MYXE_27180 (lig_1)
DNA repair and recombination proteins [BR:
mxe03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
MYXE_27180 (lig_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
UvrA_inter
Motif
Other DBs
NCBI-ProteinID:
BBU22928
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All DBs
Position
2802558..2803547
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AA seq
329 aa
AA seq
DB search
MIELPARVRAALRDEPVPDWRAPMLATLTERRFSDPRWIYERKFDGERCLAFRNGDQVRL
CSRNRQPLNGTYPELVDALAAQPISRFVVDGEVVAFDGRRTSFERLQGRLGITNPKQARA
TGIPVFYYIFDLLHLDGQRTTELPLLWRKRLLRKMFQFHDPLRYTPHRVEHGEAAYRAAC
ARGDEGVIAKLADAPYEGRRSTNWLKFKCVRDQEFVIGGYTAPKGSRIGLGALLVGYYDG
RDLVYAGKVGTGFDEATLRSLHQRLSGIEQDACPFTRGLVREPGTRWVRPELVAQVGFTE
WTRDGKLRHPRYTGLRTDKDPAEVVRETH
NT seq
990 nt
NT seq
+upstream
nt +downstream
nt
gtgatcgagttgcccgcccgggtccgcgcggccctgcgcgacgagccggtgcccgactgg
cgagccccgatgctggcgaccttgaccgagcggcggttttccgatccgcggtggatctat
gaacgcaaattcgacggtgagcgctgcctggcgttccgcaacggtgatcaggtgcgcctg
tgctcgcgtaaccgccagccgctcaacggaacctaccccgagttggtcgatgcgcttgcc
gcccaaccaatctcccggttcgtcgtcgacggcgaagttgtggcgttcgatggccggcgc
accagcttcgagcgcctgcaaggcaggctgggtatcaccaaccccaaacaagctcgggct
acaggcatcccggtgttttactacatattcgacctgctgcacctcgacggccagcgcact
accgaattgccactcctatggcgtaaacgcttgctgcgtaaaatgtttcaattccatgat
ccgctgcgctacaccccgcaccgcgtcgaacacggggaagccgcgtaccgcgcggcatgc
gcccgcggcgacgagggcgtcatcgccaagctggccgacgccccctacgagggccgtcga
tcgacgaactggctgaagttcaaatgcgtccgcgaccaggagttcgtcatcggcggctac
accgcaccgaagggcagccgaatcgggttgggggcactgctggtgggctactacgacgga
cgcgacctggtgtacgccggcaaggtgggtaccgggttcgacgaggccacattacgcagc
ctgcaccagcggttgtccggcatcgaacaggacgcgtgcccgtttacccgcgggctggtc
cgggagcccggaacacgatgggtgcggccggaattggtcgcccaggtcgggttcaccgag
tggacccgtgacggtaagctgcgccacccccgctacaccgggctgcgcaccgacaaagac
cccgccgaggtcgttcgggagacgcactga
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