Maylandia zebra (zebra mbuna): 101473585
Help
Entry
101473585 CDS
T02814
Symbol
snrnp200
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
mze
Maylandia zebra (zebra mbuna)
Pathway
mze03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mze00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101473585 (snrnp200)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mze03041
]
101473585 (snrnp200)
Enzymes [BR:
mze01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
101473585 (snrnp200)
Spliceosome [BR:
mze03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
101473585 (snrnp200)
Complex C
U5 SnRNP specific factors
101473585 (snrnp200)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
PhoH
SWI2_SNF2
DUF603
Motif
Other DBs
NCBI-GeneID:
101473585
NCBI-ProteinID:
XP_023009009
LinkDB
All DBs
Position
LG12:11620655..11634511
Genome browser
AA seq
2136 aa
AA seq
DB search
MADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLEGTKMGDKAQRTK
PQRLEERREKRRKRDEDRHDINKMKGFTLLSEGIDEMVGIVYKPKTKETRETYEVLLSFI
HAALGDQPRDILCGAADEVLAVLKNDKMRDKERRREVEQLLGPADDTRYHVLVNLGKKIT
DYGGDKDLQNMDDNIDETYGVNVQFESDEEEVDEDQYGEVRDEHSDEDSEGVEAAVDSTL
SANLGGAGDVMTVKKKDLHPRDIDAFWLQRQLSRFYDDAIVSQKKADEVLEILKTASDDR
ECENQLVLLLGFNTFDFIKILRQHRRMIQYCTMLASAQSEAEKERIIGKMESDQELSKIL
YQLQETEKEDIIREERSRRERVRKSRVDDLEAMDIDHGESVAPRQLLDLDDLTFSQGSHF
MANKRCQLPDGSFRKQRKGYEEVHVPALKPKPFAEDEVLVPIEKLPKYAQAGFEGFKTLN
RIQSKLFKTTMETDENLLVCAPTGAGKTNVALMAMLREIGKHINIDGTINVDDFKIIYIA
PMRSLVQEMVGSFSKRLASYGIIVSELTGDHQLCKEEINATQIIVCTPEKWDIITRKGGE
RTYTQLVRLIIIDEIHLLHDDRGPVLESLVARTIRNVELTQEDVRLLGLSATLPNYEDVA
TCLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVL
VFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGF
AIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWT
ELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVGKLADMLN
AEIVLGNVQNVKDAVNWLGYTYLYVRMLRNPTLYGVSHDDRSTDPLLERRRMDLVHTAAN
ILDKNSLIKYDKRTGSFQVTDLGRIASHFYITHDSIQTYNQLLKPTLSEIELFRVFSLSS
EFRNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAYISQLKLEGFALMADMV
YVTQSAGRLMRAIFEIVLSRGWAQLTDKTLNLCKMIDKRMWQSMSPLRQFKKLPEEVIKK
IEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHQFPKLDLAVHVQPITRSTLKVEL
TVTPDFQWDDKIHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLVTFFVPVFEPL
PPQYFIRVVSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNSAFEALYQ
NKFPFFNPIQTQVFNAVYNSDDNVFVGAPTGSGKTICAEFAILRMLLHNAEGRCVYITPM
EALAEQVFIDWHQKFQDILDKKVVLLTGETSTDLKLLGKGDIIISTPDKWDILSRRWKQR
KNVQNVSLFIVDETHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVAH
WLGCSTTATFNFHPNVRPVPLELHIQGFNVSHTQTRLLSMAKPVYHAIMKHSPSKPAVVF
VPSRRQTRLTAIDILTFCAADVVPQRFLHCAEKDLAPFLEKINDSTLKETLANGVGYLHE
GLSATERRIVEQLFNSGAVQVVVSSRSLCWGINISAHLVIVMDTQYYNGKIHAYVDYPIY
DVLQMVGKANRPMLDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCLHDHFNAEIVT
KTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQGMSHRHLSDHLSELVENTLHDLEQSKCI
SIEDELDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKIRGLIEIISNAAEYKNIPIRH
HEDALLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEEILSKAVRL
IQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPFFTSEHIKRCTEKGVESI
FDIMEMEDEDRSALLQLSDAQMADVARFCNRYPNIELSYEVAEKDSVKSGSPVLVQVQLE
REEEVTGPVIAPLFPQKREEGWWVVIGDPKSNSLISIKRLTLQQKAKVKLDFVAPAMGIH
NYTLYFMSDAYMGCDQEYKFSIDVKEADSDGDSDSD
NT seq
6411 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgttactgctcgaagcttgcagtacgagtacaaagcgaactctaacttggtg
cttcaagccgatcgctctctgatcgaccgcacccggagagatgagcccaccggtgaggtg
ctgtccttggtcgggaagctggaggggaccaagatgggtgacaaggcccagaggaccaaa
cctcagaggctggaggagagacgagaaaagagaagaaaaagagatgaagacagacacgac
attaacaaaatgaagggctttacccttctatctgaaggcattgatgagatggtgggcatt
gtgtacaaaccaaaaaccaaagagaccagagaaacatatgaagtgttactgagcttcatc
catgctgctttgggagatcagccgcgtgatattctctgtggagcagctgatgaagttctg
gctgtgctcaagaatgacaaaatgagggacaaagagaggcgacgggaagtagagcagctt
ctcggacctgctgatgacacgcgctaccacgtcttagtcaatctgggcaaaaagatcaca
gactatgggggggacaaagacttgcagaatatggatgacaacattgacgagacatatggt
gtcaatgttcagtttgaatctgatgaggaggaagttgatgaagaccagtatggcgaggta
cgagatgaacactcagatgaagacagtgaaggagtggaggcagctgtggattccactctc
tcagctaatctcggtggtgcgggtgacgtgatgacagtgaagaagaaagatttacatcct
cgagacatcgacgccttttggctccagcgtcagctcagccggttctacgatgatgccatt
gtctcacaaaaaaaggcagatgaggtcttagaaatcctcaagaccgccagtgacgacaga
gaatgtgaaaaccagctggtgttgctgctcggcttcaacacctttgatttcattaaaatc
ctgcgtcagcatcgtcgcatgatccagtactgtaccatgttggcaagtgctcagagtgag
gcagaaaaggagcgcatcataggaaagatggagtctgatcaggagctgtcaaagattctc
taccagctgcaagagacggagaaggaggatattattcgagaagagcggtctcgcagagag
agagtgaggaagtcccgtgttgatgacttggaagcaatggacatagaccatggagagtca
gtggcccctcgacagctgctagaccttgacgacctgactttcagtcaggggagccatttc
atggccaacaagcgttgccagctgccagatggctcttttcgtaaacagcgcaagggctat
gaagaagtccacgtacctgccctcaaacctaaaccctttgctgaagatgaggtacttgtt
cccattgagaagttgcccaagtatgcccaggctggatttgaaggctttaaaaccctgaat
cgcattcagagcaagctgttcaagaccaccatggagacagatgagaacctgctagtctgt
gctccaacgggagccggtaagaccaatgtcgccctgatggcaatgctgagagaaattgga
aagcacatcaacattgatggaacaattaatgtggacgacttcaaaatcatctacatagcc
cccatgcgctctctagtacaggagatggtgggaagttttagtaagcgtttggcaagttat
ggcatcatagtgtccgagctgacgggagaccaccagctctgtaaagaggagattaatgcc
actcagatcattgtctgcactccagagaaatgggacatcatcactcgtaaaggtggtgaa
cgtacctacacccagttagtgcgcctcattatcatagatgaaatccatctgctgcacgat
gaccgtggacctgtgctggaatctttggtggcgaggaccatccgcaacgtggagctgacc
caggaggatgtgcgtctgctgggcctcagcgccacactgccaaactatgaagacgtggct
acctgcctgcgtgtcgatcctgccaaagggctcttctactttgacaacagtttccgtccc
gtgcccctggagcagacttatgttggtatcaccgagaagaaggccatcaagcgtttccag
atcatgaatgagattgtctatgaaaagataatggagcatgctggaaagaaccaagttcta
gtgtttgtccattccaggaaggagacagggaaaactgccagggccataagggacatgtgc
ctggagaaggacactctgggtcttttcctccgagagggttctgcatctactgaagtgttg
agaactgaggcggagcagtgcaagaacctagagctgaaggatttgctcccatacggcttt
gcaatccaccacgctggtatgaccagagtcgaccgtacgctggtggaggatttgtttgcc
gatcgacatatccaggttctggtgtctacagctactttggcttggggtgtcaatctgcct
gcacatactgtcatcatcaaagggacccaagtgtacagcccagagaaaggcagatggact
gaactgggtgccctggacattttacagatgcttggtcgagctggccgtcctcagtatgac
accaaaggagagggaatcctgatcacgtctcacggagagctgcagtattatctgtccctg
ctgaaccagcagctgcccattgagagtcagatggtgggcaagctggctgacatgctcaat
gcagagatagtactgggaaatgtgcagaatgtaaaggatgctgtgaactggcttggctac
acgtatctctatgtgcgcatgcttcgcaaccccaccctgtatggtgtttctcacgacgac
cggagtacagaccccctgctggagaggcgcaggatggacttggtgcacacagcagccaac
atcctggacaagaacagtctcatcaaatatgacaagaggaccggcagcttccaggttaca
gacctgggccgcattgccagtcacttctacatcacccacgactcaatccaaacctacaac
cagctgctgaaaccgacgctcagcgagatcgaactcttccgagtgttctcactgtcctca
gagttcaggaacatcacagtgagagaggaagaaaaactggagcttcaaaagttactggaa
agagttcctatccctgtgaaggaaagcattgaggagcccagtgcgaagatcaacgtgctg
ctccaggcatacatctctcagctgaagctcgaaggctttgctctcatggctgatatggtg
tatgtaacacagagtgctgggcgattgatgcgggccatatttgagattgtgctaagcaga
ggctgggctcagctcacagacaagaccttgaatctctgcaagatgatcgataagagaatg
tggcagtccatgtctcctctgcgtcagttcaagaagctgccagaggaagtgatcaagaag
attgagaagaaaaacttcccatttgagcgactctacgacctgaaccacaacgagattggt
gaactgatccgaatgccaaagatggggaagactattcacaaatatgtccaccagttcccc
aagctggacttggccgttcatgtgcagcccatcactcgctccacactcaaagtggagctt
acagtcacacccgacttccagtgggatgacaagattcacgggtcgtctgaggctttctgg
atccttgttgaggacgtggacagtgaggtcatcctccaccatgagtatttcctcctcaaa
gccaagtacgcccaggacgagcatcttgtgactttttttgtcccggtgttcgagcctctt
ccaccgcagtacttcatccgtgtggtctcagaccgctggctgtcctgcgagactcaactc
ccagtatctttccgtcaccttatcctaccagagaagtaccccccacccactgagctgctg
gacctgcagcctcttcctgtcactgccctcaggaactctgcctttgaggcgctctaccag
aacaagttccccttcttcaaccccattcagacacaagtcttcaatgctgtgtacaacagt
gatgataacgtgtttgtgggagctcccactggcagtggaaagaccatctgtgcagagttt
gccattctgagaatgctgctgcacaatgcagaaggtcgctgtgtctacatcaccccaatg
gaagcactggctgaacaggtgtttattgactggcaccagaagttccaggacatcctggac
aagaaagttgtgttgctgacaggagagactagtactgatctgaagctcctgggaaaaggt
gacattattatcagtacccctgataaatgggacatcctgtctcgtcgttggaagcagagg
aagaacgtccagaacgtcagccttttcattgtggatgagacgcaccttatcggaggcgaa
aatggacctgtgttggaggtcatctgctccaggatgagatacatctcttcccagattgag
cgtcccatccgtatcgtggccctcagctcatctttgtccaacgccaaagatgtggcccac
tggctgggctgcagcaccacagccacattcaacttccatcccaatgtcagacccgtgcct
ctggagctgcacatccagggtttcaatgtgagtcatactcagactcgcctgctgtccatg
gcgaagccggtctatcacgccatcatgaagcactctccctcgaagccagccgtggttttc
gtcccatcccgcaggcagactcgcctcacagcgattgacattctcactttctgtgctgct
gatgtggttcctcagaggttcctgcattgtgctgagaaagacctggctccattcctggag
aaaataaatgattctactctgaaagagactctggccaacggcgtgggatacttgcacgag
ggcctctctgcaactgaacgcagaatagtggagcagctcttcaactcaggtgctgttcag
gtcgtcgtgtcctctcgttcactgtgctggggcatcaacatctcagcacaccttgtcatc
gtcatggacacccagtactacaatggcaaaattcacgcatatgtggattatcccatatat
gatgtcctccagatggtgggcaaggcaaacaggccaatgctggatgatgaggggcgctgt
gtaatcatgtgtcaaggctctaagaaggatttcttcaagaagttcctgtacgagccgctg
ccggtggagtctcacttggatcattgtctccacgaccatttcaatgctgagatcgtcacc
aagacaatagagaacaagcaggatgctgtcgactacctgacatggacattcctttaccgc
cgtatgacccagaaccccaactactacaacctgcaaggcatgtcacatcgccacctgtct
gaccacctgtctgagctggtggagaacacattacacgacctggagcagtccaagtgcatc
agcatcgaggatgagctggatgtagcaccactcaatttgggcatgattgctgcctactat
tacatcaactacaccaccatcgagctcttcagcatgtcactgaacgccaagacaaagatc
cgcggcttaattgagatcatctccaatgctgccgagtataagaacattcccatcagacac
cacgaggatgcacttctccgacagcttgcacagaaagtgccccacaagctgaacaacccg
aagttcaatgacccccacgtgaagactaacctgctgctgcaagcccatctctccaggatg
cagctgagcgctgagctccagtcagacaccgaggagatcctcagcaaggctgtccgactg
attcaggcgtgcgttgatgtgctgtccagcaacggttggctgagtcctgcactggctgct
atggagctggctcagatggtcactcaggccatgtggtccaaggactcgtacctcaaacag
ctgccattcttcacctcggagcacatcaagcgctgcacagaaaagggagtggagagcatc
tttgacataatggaaatggaggatgaagacagaagcgcgttgctgcagctctcggatgcc
cagatggccgacgtggctcgcttctgtaaccgctaccccaacatcgagctgtcgtacgaa
gtggcagagaaggacagtgtcaagagtggcagtccagttctggttcaggttcagctggag
agagaggaggaggtaacgggtccagtcattgcaccgctctttccccagaaacgtgaggag
ggctggtgggtggtgatcggagaccccaagtctaacagcctgatctctatcaagaggctg
actcttcagcagaaagcaaaggtcaagctggactttgttgccccagcgatgggcatccac
aactacaccttgtacttcatgagtgacgcatatatgggctgtgaccaggagtacaagttc
agcatagatgtaaaggaggctgacagtgatggagacagcgactcggactaa
DBGET
integrated database retrieval system
