Candidatus Nitrospira allomarina: PP769_11495
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Entry
PP769_11495 CDS
T09427
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
nall
Candidatus Nitrospira allomarina
Pathway
nall03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
nall00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
PP769_11495 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nall03400
]
PP769_11495 (ligD)
Enzymes [BR:
nall01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
PP769_11495 (ligD)
DNA repair and recombination proteins [BR:
nall03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
PP769_11495 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
RNA_ligase
DNA_primase_S
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
WNM56602
UniProt:
A0AA96G8Z4
LinkDB
All DBs
Position
2587921..2590542
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AA seq
873 aa
AA seq
DB search
MGLKEYQGKRQFGKTPEPRGTTFRTNRSSFVVHKHAASRLHYDFRLELDGVFKSWAVPKG
PSLYPSLKRLAVQVEDHPVEYGSFEGTIPKEEYGGGTVMVWDRGQWVPQGNPHHSYDRGR
LKFLLKGQKLKGGWSLVRMGGAKAKEEKNWLLIKEKDSEALRGKHSDIIDMAPKSVATGR
SLDEIAGVKQKKTGQKPASQRKSKNNSTKSRSSRSPSRKNRNSGTSRVPDPSDLPSAVSS
SQPATFHPQLATLVKTSPEGEDWLHEIKFDGYRIVSIVKNGRIRLLTRNGKDWTKKFPDI
GGALKTLPVQQGILDGEVVVLRSNGTSDFQALQNVLKGEASDPLVYFVFDLPYCEGYNLC
RTPLLKRKELLWEFIKALPEKAAAHVRYSDHIQGQGERTFEQACRRALEGIISKNAMSPY
RQARSRHWVKVKCYHRQEFVIGGYTNPSGSRKFFGALLLGYYDKEGHLQYAGRVGTGFTH
QRLSRIYGLLDKRAQSHPPFARLPSDRNILDVHWVHPELVAEVEFYEWTRDGMLRHPSFV
GLREDKPAKEIIKETPHSMNNKFSDTINSSIRGSNASPAISTEKPELALTHPEKILYPRQ
GFTKRNLAEFYLQVAKWVLPHVAGRPLTLVRCPQGSQQKCFYQKHASGSLPDSVHRILIR
EKETKAKNTYLVIDDVKGLIALVQMGVLEIHPWGCRKDRTDRPDRLVLDLDPGPGVKWEQ
LVEGAHMLKNRLSEDGIESFVKTSGGKGLHVVAPLTRRATWDQLKQYTRRLAMETAQAHP
SGFVATMSKAKRKGKIFIDYLRNTFGATSIATYGTRALPGAPVSTPVSWDELYSISGSQV
FTLTTLPQRLQNLRTDPWKGFFDLRQTLSRSLV
NT seq
2622 nt
NT seq
+upstream
nt +downstream
nt
atgggcttaaaagagtatcagggtaaacgtcaatttggtaaaaccccggaacctcgtggg
acgactttccggacaaaccggtcttcttttgttgtccataagcatgcggcaagccggtta
cattacgatttcagacttgagctggacggtgtgtttaaaagctgggcggttccgaaaggc
cccagtttatatccttccctcaagcgtctggccgttcaggttgaggatcaccccgtcgaa
tatggatccttcgaaggaaccatccccaaagaagaatatggcggtgggacggtcatggta
tgggatcggggccaatgggtccctcaaggaaatccccatcattcctacgaccggggacga
ttgaaatttcttctaaaaggccaaaagctgaaagggggatggagcctggttcgaatggga
ggggcaaaagccaaagaggaaaaaaactggttactgattaaagaaaaggattcggaagcc
cttcgagggaaacattccgatattattgatatggcccccaaaagtgtcgccaccggacga
tcattggatgagattgccggggtgaagcagaaaaaaaccgggcagaaaccggcttcccaa
cggaagtcgaaaaacaattccacaaaaagccgttcctcccgttctccttcacggaagaat
aggaattccggaacttcccgcgtccctgatccgtcagaccttccttccgctgtgtcctct
tcccaaccagccacctttcatccccagttggcgaccttggtcaaaacttctccggaaggg
gaggattggctgcatgagatcaagttcgatgggtatcgtattgtcagcattgttaaaaac
ggaagaattcgcctgttgaccagaaacggaaaggattggaccaaaaaatttcccgacatc
ggcggagcgctgaagacattgccggttcaacaaggcatccttgacggggaggtcgtcgtg
cttcgatcgaacggcacctctgattttcaggccttgcaaaatgtgttgaagggtgaagcc
tccgaccctctggtctactttgtcttcgatctgccctactgcgaagggtataatctgtgt
cggaccccgctcctcaagcgcaaagaactgttatgggaattcatcaaagccttgccggag
aaagcggccgctcacgtccgttacagcgatcatattcagggtcagggagaacgaacattc
gaacaggcctgtcgacgggccttggaagggatcatcagcaaaaatgccatgagtccctat
cggcaagcccgttcaaggcattgggttaaagtcaagtgttatcaccggcaggaatttgtc
atcggcgggtataccaacccttcgggatccagaaaatttttcggagcactgctattgggc
tattatgataaggagggacacttacaatatgcgggccgggttggcaccggttttacccac
caacgcctttcacgaatttatgggcttctggacaagcgagctcagtcccatcctcccttt
gcccggctgccttcggacaggaacattctggacgtgcattgggtccatcccgaacttgtc
gccgaggtagaattttatgaatggacacgtgacgggatgctgcgccatccttcgtttgtc
ggtctccgtgaggataaaccggcaaaagaaatcatcaaagaaactccacactctatgaac
aataaattttccgacacgattaattcttccatccggggatccaatgcctcgccggcaatc
tctacggaaaagccggaacttgcgcttacgcatcccgaaaagatcctgtatcctcggcag
ggtttcacgaaacggaatctggcggaattttatctacaggtggccaaatgggtgttgcct
catgtggccggccggccgctgacgctggtgcggtgtcctcagggatctcaacaaaaatgt
ttctaccaaaaacatgcttcgggatctcttccggattccgtgcaccgcattctgatccgc
gaaaaagaaacgaaagccaagaacacttatctggtgattgacgacgtgaaagggctgatc
gcattggtgcaaatgggcgtattggaaattcatccgtggggatgccggaaggatcggacg
gatcgacccgatcgcctggtcctcgacctggaccccggtcccggagtgaaatgggaacag
ctggttgaaggggcccatatgttaaaaaatcggctttccgaagatggcatagaaagtttt
gtgaaaacctcaggaggaaagggattacatgtcgtggcccccctgacacgtcgcgccaca
tgggaccagttaaagcagtatacccggagactggcgatggaaaccgcccaagcgcatccc
tcgggatttgtggccactatgagcaaagccaaacgaaagggaaaaatttttattgattac
cttcgtaacactttcggggccacatctattgccacctatggcactcgagctcttcccgga
gcgcctgtgtcaacccctgtgagttgggatgaactctattctatctccggttcccaggtc
tttactctcaccactctccctcaacgtcttcagaatcttaggacagatccctggaaggga
ttttttgatcttcggcagacactatcccgatcgctagtctga
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