KEGG   Candidatus Nitrospira allomarina: PP769_11495
Entry
PP769_11495       CDS       T09427                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
nall  Candidatus Nitrospira allomarina
Pathway
nall03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:nall00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    PP769_11495 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:nall03400]
    PP769_11495 (ligD)
Enzymes [BR:nall01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     PP769_11495 (ligD)
DNA repair and recombination proteins [BR:nall03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     PP769_11495 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M RNA_ligase DNA_primase_S DNA_ligase_OB_2
Other DBs
NCBI-ProteinID: WNM56602
UniProt: A0AA96G8Z4
LinkDB
Position
2587921..2590542
AA seq 873 aa
MGLKEYQGKRQFGKTPEPRGTTFRTNRSSFVVHKHAASRLHYDFRLELDGVFKSWAVPKG
PSLYPSLKRLAVQVEDHPVEYGSFEGTIPKEEYGGGTVMVWDRGQWVPQGNPHHSYDRGR
LKFLLKGQKLKGGWSLVRMGGAKAKEEKNWLLIKEKDSEALRGKHSDIIDMAPKSVATGR
SLDEIAGVKQKKTGQKPASQRKSKNNSTKSRSSRSPSRKNRNSGTSRVPDPSDLPSAVSS
SQPATFHPQLATLVKTSPEGEDWLHEIKFDGYRIVSIVKNGRIRLLTRNGKDWTKKFPDI
GGALKTLPVQQGILDGEVVVLRSNGTSDFQALQNVLKGEASDPLVYFVFDLPYCEGYNLC
RTPLLKRKELLWEFIKALPEKAAAHVRYSDHIQGQGERTFEQACRRALEGIISKNAMSPY
RQARSRHWVKVKCYHRQEFVIGGYTNPSGSRKFFGALLLGYYDKEGHLQYAGRVGTGFTH
QRLSRIYGLLDKRAQSHPPFARLPSDRNILDVHWVHPELVAEVEFYEWTRDGMLRHPSFV
GLREDKPAKEIIKETPHSMNNKFSDTINSSIRGSNASPAISTEKPELALTHPEKILYPRQ
GFTKRNLAEFYLQVAKWVLPHVAGRPLTLVRCPQGSQQKCFYQKHASGSLPDSVHRILIR
EKETKAKNTYLVIDDVKGLIALVQMGVLEIHPWGCRKDRTDRPDRLVLDLDPGPGVKWEQ
LVEGAHMLKNRLSEDGIESFVKTSGGKGLHVVAPLTRRATWDQLKQYTRRLAMETAQAHP
SGFVATMSKAKRKGKIFIDYLRNTFGATSIATYGTRALPGAPVSTPVSWDELYSISGSQV
FTLTTLPQRLQNLRTDPWKGFFDLRQTLSRSLV
NT seq 2622 nt   +upstreamnt  +downstreamnt
atgggcttaaaagagtatcagggtaaacgtcaatttggtaaaaccccggaacctcgtggg
acgactttccggacaaaccggtcttcttttgttgtccataagcatgcggcaagccggtta
cattacgatttcagacttgagctggacggtgtgtttaaaagctgggcggttccgaaaggc
cccagtttatatccttccctcaagcgtctggccgttcaggttgaggatcaccccgtcgaa
tatggatccttcgaaggaaccatccccaaagaagaatatggcggtgggacggtcatggta
tgggatcggggccaatgggtccctcaaggaaatccccatcattcctacgaccggggacga
ttgaaatttcttctaaaaggccaaaagctgaaagggggatggagcctggttcgaatggga
ggggcaaaagccaaagaggaaaaaaactggttactgattaaagaaaaggattcggaagcc
cttcgagggaaacattccgatattattgatatggcccccaaaagtgtcgccaccggacga
tcattggatgagattgccggggtgaagcagaaaaaaaccgggcagaaaccggcttcccaa
cggaagtcgaaaaacaattccacaaaaagccgttcctcccgttctccttcacggaagaat
aggaattccggaacttcccgcgtccctgatccgtcagaccttccttccgctgtgtcctct
tcccaaccagccacctttcatccccagttggcgaccttggtcaaaacttctccggaaggg
gaggattggctgcatgagatcaagttcgatgggtatcgtattgtcagcattgttaaaaac
ggaagaattcgcctgttgaccagaaacggaaaggattggaccaaaaaatttcccgacatc
ggcggagcgctgaagacattgccggttcaacaaggcatccttgacggggaggtcgtcgtg
cttcgatcgaacggcacctctgattttcaggccttgcaaaatgtgttgaagggtgaagcc
tccgaccctctggtctactttgtcttcgatctgccctactgcgaagggtataatctgtgt
cggaccccgctcctcaagcgcaaagaactgttatgggaattcatcaaagccttgccggag
aaagcggccgctcacgtccgttacagcgatcatattcagggtcagggagaacgaacattc
gaacaggcctgtcgacgggccttggaagggatcatcagcaaaaatgccatgagtccctat
cggcaagcccgttcaaggcattgggttaaagtcaagtgttatcaccggcaggaatttgtc
atcggcgggtataccaacccttcgggatccagaaaatttttcggagcactgctattgggc
tattatgataaggagggacacttacaatatgcgggccgggttggcaccggttttacccac
caacgcctttcacgaatttatgggcttctggacaagcgagctcagtcccatcctcccttt
gcccggctgccttcggacaggaacattctggacgtgcattgggtccatcccgaacttgtc
gccgaggtagaattttatgaatggacacgtgacgggatgctgcgccatccttcgtttgtc
ggtctccgtgaggataaaccggcaaaagaaatcatcaaagaaactccacactctatgaac
aataaattttccgacacgattaattcttccatccggggatccaatgcctcgccggcaatc
tctacggaaaagccggaacttgcgcttacgcatcccgaaaagatcctgtatcctcggcag
ggtttcacgaaacggaatctggcggaattttatctacaggtggccaaatgggtgttgcct
catgtggccggccggccgctgacgctggtgcggtgtcctcagggatctcaacaaaaatgt
ttctaccaaaaacatgcttcgggatctcttccggattccgtgcaccgcattctgatccgc
gaaaaagaaacgaaagccaagaacacttatctggtgattgacgacgtgaaagggctgatc
gcattggtgcaaatgggcgtattggaaattcatccgtggggatgccggaaggatcggacg
gatcgacccgatcgcctggtcctcgacctggaccccggtcccggagtgaaatgggaacag
ctggttgaaggggcccatatgttaaaaaatcggctttccgaagatggcatagaaagtttt
gtgaaaacctcaggaggaaagggattacatgtcgtggcccccctgacacgtcgcgccaca
tgggaccagttaaagcagtatacccggagactggcgatggaaaccgcccaagcgcatccc
tcgggatttgtggccactatgagcaaagccaaacgaaagggaaaaatttttattgattac
cttcgtaacactttcggggccacatctattgccacctatggcactcgagctcttcccgga
gcgcctgtgtcaacccctgtgagttgggatgaactctattctatctccggttcccaggtc
tttactctcaccactctccctcaacgtcttcagaatcttaggacagatccctggaaggga
ttttttgatcttcggcagacactatcccgatcgctagtctga

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