KEGG   Nautilia profundicola: NAMH_0181
Entry
NAMH_0181         CDS       T00860                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
nam  Nautilia profundicola
Pathway
nam03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:nam00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    NAMH_0181 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:nam03021]
    NAMH_0181 (rpoC)
   03400 DNA repair and recombination proteins [BR:nam03400]
    NAMH_0181 (rpoC)
Enzymes [BR:nam01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     NAMH_0181 (rpoC)
Transcription machinery [BR:nam03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     NAMH_0181 (rpoC)
DNA repair and recombination proteins [BR:nam03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      NAMH_0181 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Biotin_lipoyl_2 DUF3150
Other DBs
NCBI-ProteinID: ACM92304
UniProt: B9L7J7
LinkDB
Position
155789..160291
AA seq 1500 aa
MKKFKYVKLDWDEENRPKDIDAVQVKIASPEEILSWSFGEVKKPETINYRTLKPERDGLF
CAKIFGPINDYECLCGKYKKMRYKGIVCEKCGVKVTSSKVRRERFGHIELVTPVAHIWYV
SNLPSRIGTLLDIKMKDLERVLYYEAYVVYEPGDAPVNKGDVLVEDEYRKLVELYGDTGF
HAEMGAEIIKRMLEELDLAEMYHTLKEELKNTRSEARKKDIVKKLKIVEGFLNSDNRPEW
MIMSVIPVLPPDLRPLVALDGGKFAVADVNDLYRRVIHRNQRLKRLIELDAPEIIIRNEK
RMLQEAVDALFDNGRRGNTIKGANKRPLKSLSDVIKGKTGRFRQNLLGKRVDYSGRSVIV
VGPNLRMDQCGLPKKMALELFKPHLIGKLEEKGYATTIKQAKRHIEEKTPEVWECLQEVV
DQYPVLLNRAPTLHKLSIQAFHPVLIDGNAIQLHPLVCAAFNADFDGDQMAVHVPLSQEA
IAEAKVLMLSSMNILLPASGKAIAVPSQDMVLGIYYISLMKDGVKGEHKLFASPEEVLAA
FDEGAVDLHAKVKVKVKNEVVDTTPGRMILHSIAPDFVPVEMYNKIMKKKDISNLVDYVY
KYGGLKVTAEFLDNLKNLGFKYAAKVGVSISAADIVVPEEKQQIVEEALKKVKEVQEQYK
KGLLTDQERYNKIIDIWTKANNDIADKLMELMKKDKDGFNSIYMMADSGARGSASQIKQL
AGMRGLMAKPNGEIIETPIISNFKEGLNVLEFFISTHGARKGLADTALKTASAGYLTRKL
VDVSQNFRVIMQDCGTHEGIEVTDIADGSTLVESLEERIYGRVLADDVYDPITNEVLYTE
GTLITEEEAKEIVRKGVKSVKIRSALTCKAPKGICAKCYGMSLAERRLVKVGEAVGILAA
QSIGEPGTQLTLRTFHTGGIAGSTQEERQIVAEKYGYIRYYNIETYERDGKKIVANRRNA
AVLLVEPKLKAPCDGIVRIETQHEEVLVEIECDDGTVKRYSLRKNDIVKGTELAGIAGKT
EGKLYLPYKNARVSKDDAIVEVIKEAWYIPQRIPYGAELKVADNEPVPLKVEAKASGMVK
YYKLTGDHLERIYDIKAGTEIGFDNEYKGLFAVIVDENDREADRYYIVRGSKILVDDNAK
IKAGDLIAEPIKGESKVIAEWDPFANPILAEADGVVKFEDVIDGFTVTTQVDELTGESRI
IVKEYLPKGYQPRILLANKEKVFEYVLEPKTVIHVQEGAEVKQGDILAKTPKAVARSADI
TGGLPRVNELFEARRPKSPAIISEIDGYVKFGKTVRGKQRLIVEGETSVKEYLVPQDRQI
LVHEGDFVHAGERLTDGIISSYDILNILGEKALQQYIVAEVQKVYRLQGVNINDKHIELI
VNQMLRQVRILDSGDTKFIEGDLVSKKIFNEENERIKKFGGEPAIAEPMLVGITRAAIQS
DSFISAASFQETTRVLTEASIQGKFDYLEDFKENIVLGRVVPVGTGMFYHHDRDLKLDHQ
NT seq 4503 nt   +upstreamnt  +downstreamnt
atgaagaaatttaagtacgtaaaacttgactgggatgaagagaacagaccaaaagacata
gatgctgttcaagttaaaatagcatctccggaagagatcctttcttggtcttttggtgaa
gttaaaaagcctgagactattaattatagaactctaaaacctgaaagagacgggcttttc
tgtgcaaaaattttcggacctataaatgattatgagtgtctttgcggtaaatacaaaaaa
atgcgctacaaaggtatcgtttgtgaaaaatgtggggttaaagttacttcttctaaagtt
agaagagaaagattcggtcacattgaacttgtgactcccgtagcgcatatctggtatgtt
tcaaaccttccaagtagaatcggaacgcttcttgatattaaaatgaaagatcttgaaaga
gtactttattatgaagcatacgttgtatatgaacctggtgacgctcccgtaaacaaaggt
gacgtattagtagaagacgaatatagaaaacttgttgagctttacggtgatacagggttc
catgctgaaatgggagctgagattattaaaagaatgcttgaagaacttgatctggctgaa
atgtatcatacgttaaaagaagagcttaaaaacacaagaagcgaagcaagaaaaaaagac
attgtgaaaaaacttaaaattgttgaaggtttcttaaactccgacaacagacctgagtgg
atgattatgtcagtaattccggtacttccgccagatcttagacctcttgttgcacttgac
ggtggtaaatttgctgttgctgatgttaacgacctttacagaagggtaattcatagaaac
caaagacttaaaagactaatcgaacttgatgcgcctgagattattatcagaaacgaaaaa
agaatgcttcaagaagcggtagacgcactttttgacaacggaagaagaggtaacactatt
aaaggtgcaaacaaaagacctcttaaatcactaagtgatgttattaaaggtaaaacggga
agatttagacaaaaccttcttggtaaaagggttgactactcaggaagaagtgttatcgtg
gttggaccgaacctaagaatggatcagtgcggtcttcctaaaaaaatggcgcttgaacta
ttcaaaccgcatctaatcggtaaacttgaagaaaaaggttacgcgacgacaattaaacag
gcaaaaagacatattgaagaaaaaacacctgaagtttgggaatgtctacaagaagttgtt
gatcagtatcctgtacttttaaacagggcgccgacacttcataaattatcaattcaggca
ttccatccggtacttatcgacggaaatgcgattcaattgcatccgcttgtttgtgcggca
ttcaacgccgacttcgacggtgaccagatggctgttcacgtacctttaagccaggaagca
attgccgaagcaaaagtattgatgttaagttctatgaatattctattaccagcttcgggt
aaagctattgcggttccttcacaggatatggtacttggtatttattatatttctcttatg
aaagacggagtaaaaggtgaacataaactgttcgcttcacctgaagaagtacttgcggca
tttgacgaaggtgctgtggatttacatgcaaaagtaaaagtaaaagttaaaaacgaagtt
gttgatacaactcctggtagaatgattttacattcaattgcacctgattttgtaccggtt
gagatgtacaataagatcatgaagaaaaaagatatctcaaaccttgtagattatgtatat
aaatacggtggacttaaagtaaccgcggaatttttggataaccttaaaaacttaggtttc
aaatatgcggctaaagtcggggtatctatttctgctgctgatatcgtagttccggaagaa
aaacagcaaatcgtagaagaagcgcttaaaaaagtaaaagaagttcaggaacagtataaa
aaaggtctacttacagatcaggaaagatataataaaattatcgatatctggacaaaagct
aacaacgatatcgcagataaactgatggaacttatgaaaaaagacaaagacggattcaac
tctatttatatgatggccgactcaggtgcgaggggtagtgcgtctcagattaaacagctt
gcaggtatgaggggtcttatggcgaaacctaacggtgaaattatcgagacaccgattatc
tcgaactttaaagaaggtctaaacgtacttgagttcttcatctcgactcacggtgcgaga
aaaggtcttgcggatacggcccttaaaacggcaagtgcgggataccttacaagaaaactt
gttgacgtttcacaaaacttcagagtaatcatgcaggattgtggaactcatgaaggtatt
gaagttactgatattgcagacggttctactcttgttgaaagccttgaagagagaatttac
ggaagagttttagcggatgacgtttacgatccgattactaacgaagtgctttatactgaa
ggtacattaattactgaagaagaagcgaaagaaatcgttagaaaaggtgttaaatcagta
aaaatcagaagtgcgcttacatgtaaagcgcctaaaggtatctgtgctaaatgttacgga
atgagtctggctgaaagacgtcttgtaaaagttggtgaggctgtaggtatcttagcggct
caatcaatcggtgaacctggtacacagttgacactaagaacattccacacaggtggtatt
gcgggatctactcaggaagagagacaaatcgtagctgaaaaatatggatacatcagatac
tataacattgaaacatatgaaagagacggcaaaaaaatcgttgcaaacagaagaaatgct
gcagtacttttagtagagccgaaactaaaagctccgtgtgacggaattgtaagaattgaa
actcagcacgaagaagtgcttgttgaaatcgaatgtgacgacggaacagttaaaagatat
tcgttaagaaaaaatgacatcgttaagggaactgaacttgcaggtattgcgggtaaaaca
gaagggaaactttatctgccgtataagaatgcgagagttagtaaagatgacgccattgtt
gaagttattaaagaagcgtggtatatcccacaaaggatcccatacggtgccgaacttaaa
gttgcagataatgagccggttcctttaaaagttgaagcaaaagccagcggtatggttaaa
tactataaacttacaggggatcatttagagagaatttacgatattaaagccggaactgaa
atcgggtttgacaatgaatacaaaggtctgtttgccgtaatcgttgatgaaaacgacaga
gaggctgatagatactatatcgttagaggttctaaaatccttgttgatgacaacgctaag
attaaagctggtgatttaattgccgagcctattaaaggtgagagcaaagtaattgctgag
tgggatccgtttgctaacccaatcctggctgaagctgacggtgttgttaaattcgaagac
gtaatcgacggatttacagttacgactcaggtggatgagttaacaggtgaatcaagaatt
atcgtaaaagagtacttaccaaaaggttatcagccaagaattttacttgcaaacaaagaa
aaagtattcgaatatgtgcttgagcctaaaacggttatccacgtgcaagaaggtgctgag
gttaaacaaggggatatccttgcaaaaacaccaaaagcggttgcaagaagtgccgacatt
acagggggtcttccaagggttaatgaactctttgaagcaagaagaccgaaatcaccggca
attatcagtgaaattgacggttatgtgaaattcggaaaaactgttagaggtaaacaaaga
ctgatagttgagggtgaaacaagtgtaaaagaatatcttgttcctcaggacagacaaatc
ctggtacacgaaggcgactttgtacatgcgggtgagagactgactgacggtattatttca
agttatgatattcttaacatccttggagaaaaagcacttcagcaatatattgttgcggaa
gttcaaaaagtatacagacttcaaggggttaacattaacgataaacatatcgagcttatc
gttaaccagatgttaagacaggtaagaatccttgacagcggtgatactaaattcattgaa
ggtgacctggtaagtaaaaaaatatttaatgaagagaatgaaagaattaaaaaattcggc
ggtgaacctgcaattgcagagccaatgcttgtaggtattacaagagcggcaatccagagt
gacagctttatttcggctgcttcattccaggaaacaacaagagttcttacagaagcaagt
attcaaggtaaatttgattatcttgaagactttaaagaaaacatcgttcttggtagggtt
gtaccagtcggtacgggaatgttctatcatcatgatagagatcttaaactcgaccatcaa
taa

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