Nautilia profundicola: NAMH_0181
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Entry
NAMH_0181 CDS
T00860
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
nam
Nautilia profundicola
Pathway
nam03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
nam00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NAMH_0181 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nam03021
]
NAMH_0181 (rpoC)
03400 DNA repair and recombination proteins [BR:
nam03400
]
NAMH_0181 (rpoC)
Enzymes [BR:
nam01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NAMH_0181 (rpoC)
Transcription machinery [BR:
nam03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NAMH_0181 (rpoC)
DNA repair and recombination proteins [BR:
nam03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NAMH_0181 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
DUF3150
Motif
Other DBs
NCBI-ProteinID:
ACM92304
UniProt:
B9L7J7
LinkDB
All DBs
Position
155789..160291
Genome browser
AA seq
1500 aa
AA seq
DB search
MKKFKYVKLDWDEENRPKDIDAVQVKIASPEEILSWSFGEVKKPETINYRTLKPERDGLF
CAKIFGPINDYECLCGKYKKMRYKGIVCEKCGVKVTSSKVRRERFGHIELVTPVAHIWYV
SNLPSRIGTLLDIKMKDLERVLYYEAYVVYEPGDAPVNKGDVLVEDEYRKLVELYGDTGF
HAEMGAEIIKRMLEELDLAEMYHTLKEELKNTRSEARKKDIVKKLKIVEGFLNSDNRPEW
MIMSVIPVLPPDLRPLVALDGGKFAVADVNDLYRRVIHRNQRLKRLIELDAPEIIIRNEK
RMLQEAVDALFDNGRRGNTIKGANKRPLKSLSDVIKGKTGRFRQNLLGKRVDYSGRSVIV
VGPNLRMDQCGLPKKMALELFKPHLIGKLEEKGYATTIKQAKRHIEEKTPEVWECLQEVV
DQYPVLLNRAPTLHKLSIQAFHPVLIDGNAIQLHPLVCAAFNADFDGDQMAVHVPLSQEA
IAEAKVLMLSSMNILLPASGKAIAVPSQDMVLGIYYISLMKDGVKGEHKLFASPEEVLAA
FDEGAVDLHAKVKVKVKNEVVDTTPGRMILHSIAPDFVPVEMYNKIMKKKDISNLVDYVY
KYGGLKVTAEFLDNLKNLGFKYAAKVGVSISAADIVVPEEKQQIVEEALKKVKEVQEQYK
KGLLTDQERYNKIIDIWTKANNDIADKLMELMKKDKDGFNSIYMMADSGARGSASQIKQL
AGMRGLMAKPNGEIIETPIISNFKEGLNVLEFFISTHGARKGLADTALKTASAGYLTRKL
VDVSQNFRVIMQDCGTHEGIEVTDIADGSTLVESLEERIYGRVLADDVYDPITNEVLYTE
GTLITEEEAKEIVRKGVKSVKIRSALTCKAPKGICAKCYGMSLAERRLVKVGEAVGILAA
QSIGEPGTQLTLRTFHTGGIAGSTQEERQIVAEKYGYIRYYNIETYERDGKKIVANRRNA
AVLLVEPKLKAPCDGIVRIETQHEEVLVEIECDDGTVKRYSLRKNDIVKGTELAGIAGKT
EGKLYLPYKNARVSKDDAIVEVIKEAWYIPQRIPYGAELKVADNEPVPLKVEAKASGMVK
YYKLTGDHLERIYDIKAGTEIGFDNEYKGLFAVIVDENDREADRYYIVRGSKILVDDNAK
IKAGDLIAEPIKGESKVIAEWDPFANPILAEADGVVKFEDVIDGFTVTTQVDELTGESRI
IVKEYLPKGYQPRILLANKEKVFEYVLEPKTVIHVQEGAEVKQGDILAKTPKAVARSADI
TGGLPRVNELFEARRPKSPAIISEIDGYVKFGKTVRGKQRLIVEGETSVKEYLVPQDRQI
LVHEGDFVHAGERLTDGIISSYDILNILGEKALQQYIVAEVQKVYRLQGVNINDKHIELI
VNQMLRQVRILDSGDTKFIEGDLVSKKIFNEENERIKKFGGEPAIAEPMLVGITRAAIQS
DSFISAASFQETTRVLTEASIQGKFDYLEDFKENIVLGRVVPVGTGMFYHHDRDLKLDHQ
NT seq
4503 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaatttaagtacgtaaaacttgactgggatgaagagaacagaccaaaagacata
gatgctgttcaagttaaaatagcatctccggaagagatcctttcttggtcttttggtgaa
gttaaaaagcctgagactattaattatagaactctaaaacctgaaagagacgggcttttc
tgtgcaaaaattttcggacctataaatgattatgagtgtctttgcggtaaatacaaaaaa
atgcgctacaaaggtatcgtttgtgaaaaatgtggggttaaagttacttcttctaaagtt
agaagagaaagattcggtcacattgaacttgtgactcccgtagcgcatatctggtatgtt
tcaaaccttccaagtagaatcggaacgcttcttgatattaaaatgaaagatcttgaaaga
gtactttattatgaagcatacgttgtatatgaacctggtgacgctcccgtaaacaaaggt
gacgtattagtagaagacgaatatagaaaacttgttgagctttacggtgatacagggttc
catgctgaaatgggagctgagattattaaaagaatgcttgaagaacttgatctggctgaa
atgtatcatacgttaaaagaagagcttaaaaacacaagaagcgaagcaagaaaaaaagac
attgtgaaaaaacttaaaattgttgaaggtttcttaaactccgacaacagacctgagtgg
atgattatgtcagtaattccggtacttccgccagatcttagacctcttgttgcacttgac
ggtggtaaatttgctgttgctgatgttaacgacctttacagaagggtaattcatagaaac
caaagacttaaaagactaatcgaacttgatgcgcctgagattattatcagaaacgaaaaa
agaatgcttcaagaagcggtagacgcactttttgacaacggaagaagaggtaacactatt
aaaggtgcaaacaaaagacctcttaaatcactaagtgatgttattaaaggtaaaacggga
agatttagacaaaaccttcttggtaaaagggttgactactcaggaagaagtgttatcgtg
gttggaccgaacctaagaatggatcagtgcggtcttcctaaaaaaatggcgcttgaacta
ttcaaaccgcatctaatcggtaaacttgaagaaaaaggttacgcgacgacaattaaacag
gcaaaaagacatattgaagaaaaaacacctgaagtttgggaatgtctacaagaagttgtt
gatcagtatcctgtacttttaaacagggcgccgacacttcataaattatcaattcaggca
ttccatccggtacttatcgacggaaatgcgattcaattgcatccgcttgtttgtgcggca
ttcaacgccgacttcgacggtgaccagatggctgttcacgtacctttaagccaggaagca
attgccgaagcaaaagtattgatgttaagttctatgaatattctattaccagcttcgggt
aaagctattgcggttccttcacaggatatggtacttggtatttattatatttctcttatg
aaagacggagtaaaaggtgaacataaactgttcgcttcacctgaagaagtacttgcggca
tttgacgaaggtgctgtggatttacatgcaaaagtaaaagtaaaagttaaaaacgaagtt
gttgatacaactcctggtagaatgattttacattcaattgcacctgattttgtaccggtt
gagatgtacaataagatcatgaagaaaaaagatatctcaaaccttgtagattatgtatat
aaatacggtggacttaaagtaaccgcggaatttttggataaccttaaaaacttaggtttc
aaatatgcggctaaagtcggggtatctatttctgctgctgatatcgtagttccggaagaa
aaacagcaaatcgtagaagaagcgcttaaaaaagtaaaagaagttcaggaacagtataaa
aaaggtctacttacagatcaggaaagatataataaaattatcgatatctggacaaaagct
aacaacgatatcgcagataaactgatggaacttatgaaaaaagacaaagacggattcaac
tctatttatatgatggccgactcaggtgcgaggggtagtgcgtctcagattaaacagctt
gcaggtatgaggggtcttatggcgaaacctaacggtgaaattatcgagacaccgattatc
tcgaactttaaagaaggtctaaacgtacttgagttcttcatctcgactcacggtgcgaga
aaaggtcttgcggatacggcccttaaaacggcaagtgcgggataccttacaagaaaactt
gttgacgtttcacaaaacttcagagtaatcatgcaggattgtggaactcatgaaggtatt
gaagttactgatattgcagacggttctactcttgttgaaagccttgaagagagaatttac
ggaagagttttagcggatgacgtttacgatccgattactaacgaagtgctttatactgaa
ggtacattaattactgaagaagaagcgaaagaaatcgttagaaaaggtgttaaatcagta
aaaatcagaagtgcgcttacatgtaaagcgcctaaaggtatctgtgctaaatgttacgga
atgagtctggctgaaagacgtcttgtaaaagttggtgaggctgtaggtatcttagcggct
caatcaatcggtgaacctggtacacagttgacactaagaacattccacacaggtggtatt
gcgggatctactcaggaagagagacaaatcgtagctgaaaaatatggatacatcagatac
tataacattgaaacatatgaaagagacggcaaaaaaatcgttgcaaacagaagaaatgct
gcagtacttttagtagagccgaaactaaaagctccgtgtgacggaattgtaagaattgaa
actcagcacgaagaagtgcttgttgaaatcgaatgtgacgacggaacagttaaaagatat
tcgttaagaaaaaatgacatcgttaagggaactgaacttgcaggtattgcgggtaaaaca
gaagggaaactttatctgccgtataagaatgcgagagttagtaaagatgacgccattgtt
gaagttattaaagaagcgtggtatatcccacaaaggatcccatacggtgccgaacttaaa
gttgcagataatgagccggttcctttaaaagttgaagcaaaagccagcggtatggttaaa
tactataaacttacaggggatcatttagagagaatttacgatattaaagccggaactgaa
atcgggtttgacaatgaatacaaaggtctgtttgccgtaatcgttgatgaaaacgacaga
gaggctgatagatactatatcgttagaggttctaaaatccttgttgatgacaacgctaag
attaaagctggtgatttaattgccgagcctattaaaggtgagagcaaagtaattgctgag
tgggatccgtttgctaacccaatcctggctgaagctgacggtgttgttaaattcgaagac
gtaatcgacggatttacagttacgactcaggtggatgagttaacaggtgaatcaagaatt
atcgtaaaagagtacttaccaaaaggttatcagccaagaattttacttgcaaacaaagaa
aaagtattcgaatatgtgcttgagcctaaaacggttatccacgtgcaagaaggtgctgag
gttaaacaaggggatatccttgcaaaaacaccaaaagcggttgcaagaagtgccgacatt
acagggggtcttccaagggttaatgaactctttgaagcaagaagaccgaaatcaccggca
attatcagtgaaattgacggttatgtgaaattcggaaaaactgttagaggtaaacaaaga
ctgatagttgagggtgaaacaagtgtaaaagaatatcttgttcctcaggacagacaaatc
ctggtacacgaaggcgactttgtacatgcgggtgagagactgactgacggtattatttca
agttatgatattcttaacatccttggagaaaaagcacttcagcaatatattgttgcggaa
gttcaaaaagtatacagacttcaaggggttaacattaacgataaacatatcgagcttatc
gttaaccagatgttaagacaggtaagaatccttgacagcggtgatactaaattcattgaa
ggtgacctggtaagtaaaaaaatatttaatgaagagaatgaaagaattaaaaaattcggc
ggtgaacctgcaattgcagagccaatgcttgtaggtattacaagagcggcaatccagagt
gacagctttatttcggctgcttcattccaggaaacaacaagagttcttacagaagcaagt
attcaaggtaaatttgattatcttgaagactttaaagaaaacatcgttcttggtagggtt
gtaccagtcggtacgggaatgttctatcatcatgatagagatcttaaactcgaccatcaa
taa
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integrated database retrieval system