Nannocystis poenicansa: O0S08_46135
Help
Entry
O0S08_46135 CDS
T08663
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
nann
Nannocystis poenicansa
Pathway
nann03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
nann00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
O0S08_46135 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nann03400
]
O0S08_46135 (ligD)
Enzymes [BR:
nann01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
O0S08_46135 (ligD)
DNA repair and recombination proteins [BR:
nann03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
O0S08_46135 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
RNA_ligase
HC2
DNA_primase_S
Phage_attach
Motif
Other DBs
NCBI-ProteinID:
WAS93568
LinkDB
All DBs
Position
12010807..12013626
Genome browser
AA seq
939 aa
AA seq
DB search
MSLARYHQKRDFARTPEPRGKSPRSRSQGEFIIHKHAARRLHYDLRLELDGVLKSWAVPK
GPSLDPHDKRLAVHVEDHPLEYGKFEGTIPQGEYGGGSVVLWDRGHWYPEGDARADYRAG
KLKFRLDGHKLHGAYTLVRMHGRRDDDHDNWLLIKEDDEEASDDGEALVRDQPESIVSGR
TVEEIAAGVPARKKKAARKTTNKQAADKPSNSKARRSAANKPARNDAANAAVKSTARTAG
KKNKKAATKKAATKKAATKKAAPKKAATKKAAPKKAAPKKAAKKATSKKAAAKKTTRRPR
AARKKSSKRATAAKKSTPERPLPARVAPELATLVEKVPPGDDWCHEIKFDGYRLLVRLDG
DDIRLITRGEQDWTERLAPLAKSLQQRLGERRLLVDGELVHVDEDGLTHFGPLQAALAED
RTGELVFYAFDLLNLDGHDLRPLPLLERKELLAELLPPEDAPGRVRLSEHIVGGGEELLA
RACSLGLEGILSKRADAPYRSGRTRDWLKIKCGRRQEVVIGGYATARSGPRALGALLVGV
FDDDGALQYAGKVGTGFDFAEAARLKKLLSEREASRSPFAKRLPTGLGDTHFVRPDLVAE
VRFGEWTSDGRMRHPVYEGLREDKRPRQVHREVPAATPAAGAAQVLGVPLSNPGRVLWPD
DKITKRDLAEYYAEIVDWILPHVVDRPLSLVRCPDGLGKPCFFQRHLRHDLPEGISTLEI
EGDDEPGYVYVRDERGLIGLAQIGALELHAWGATVADPDGPDRMVLDLDPAEDVPWDMVK
GAARAMRERLAQLDLDSFLKTTGGKGLHVVVPLTAGRQTWADVKAFARGIAREFALADPE
HFVDVAAKHKRRGKIYVDYLRNDRGATSVAAYSPRARPGATVSVPLRWTELAGLTDPRAY
DLDSTVARLAKLRGDPWRELTRVRQSLTAARLREVSGKT
NT seq
2820 nt
NT seq
+upstream
nt +downstream
nt
atgtcgctcgcgcgctaccaccagaagcgggacttcgcccgcaccccggagccgcgcgga
aagtcgcccaggagccgctcccagggcgaattcatcattcacaagcacgccgcgcggcgg
ctgcactacgacctgcggctcgagctcgacggcgtgctcaagagctgggcggtgcccaag
ggcccgagcctcgacccacacgacaagcggctcgcggtccacgtcgaggaccacccgctc
gagtacggcaagttcgagggcaccatcccgcagggcgagtacggcggcggctccgtggtc
ctgtgggaccgcggccactggtaccccgagggcgacgcccgcgccgactaccgcgccggc
aagctcaagttccgcctcgacggccacaagctccacggcgcctacaccctcgtgcgcatg
cacggccggcgcgacgacgatcacgacaattggctgctgatcaaggaagacgacgaggag
gccagcgacgacggcgaggccctcgtgcgcgaccagcccgagagcatcgtcagcggccgc
accgtcgaggagatcgccgccggcgtgccggccaggaagaagaaggccgcccgcaagacc
accaacaagcaggccgccgacaagccgagcaacagcaaggcccgccgctccgcggccaac
aagccggcccgcaacgacgccgccaacgcggccgtcaagtcgaccgccaggaccgccggc
aagaagaacaagaaagccgcgaccaagaaggccgcgaccaagaaggccgcgaccaagaag
gccgcgcccaagaaggccgcgaccaagaaggccgcgcccaagaaagccgcgcccaagaag
gccgccaagaaggcgacgagcaagaaagccgccgccaagaagaccaccaggcgcccgcgc
gccgccaggaagaaatccagcaagcgcgcgaccgctgccaagaaatcgacgcccgagcgc
ccgctcccggcccgggtcgcgccggagctggccaccctggtggaaaaagtcccgcccggc
gacgattggtgccacgagatcaagttcgacggttatcgcctgctcgtccgcctcgacggt
gacgacattcgcctgatcacccgcggcgagcaggactggaccgagcggctcgcgccgctg
gccaaatcactgcagcagcggctcggcgagcgccgcctcctcgtcgacggcgagctcgtg
cacgtcgacgaggacggcctcacccacttcggtccgctgcaggccgccttggccgaggat
cgcaccggcgagctcgtgttctacgcgttcgacctgctgaacctcgacggccacgacctg
cggcccttgccgctgctcgagcgcaaggagctgctggccgagctgctcccgcccgaggac
gcccccggccgcgtgcgcctgtcggagcacatcgtcggcggcggcgaggagctgctcgcg
cgcgcctgctcgctcggcctcgagggcatcctctccaagcgcgccgacgccccctatcgc
agcggccgcacccgcgactggctgaagatcaagtgcggccgccggcaggaggtcgtcatc
ggcggctacgcgaccgcgcgcagcggcccgcgggcgctcggcgccctgctggtcggcgtg
ttcgacgacgacggcgccctgcagtacgccggcaaggtcggcaccggcttcgacttcgcc
gaggccgcccgcctcaagaagctgctgagcgagcgcgaggcctcgcgctccccgttcgcg
aagcgcctgccgaccggcctcggcgacactcacttcgtccgccccgacctcgtggcggag
gtccgcttcggcgagtggaccagcgacggtcgcatgcggcacccggtctacgagggcctg
cgcgaggacaagcggcccaggcaggtccaccgcgaggtcccggccgcgaccccggccgcg
ggcgcggcccaggtgctcggcgtcccgctgtcgaacccgggccgcgtgctgtggcccgac
gacaagatcaccaagcgcgacctcgccgagtactacgccgagatcgtcgactggatcctc
ccgcacgtcgtcgaccgcccgctcagcctggtccgctgccccgacgggctcggcaagccg
tgcttcttccagcgtcatttgcggcacgacctgccggagggcatctcgacgctcgagatc
gagggcgacgacgagccgggctacgtctacgtccgcgacgagcgcggcctgatcggcctg
gcgcagatcggcgcgctcgagctgcacgcctggggcgccaccgtcgccgaccccgacggc
cccgaccgcatggtcctcgacctcgaccccgccgaggatgtcccatgggacatggtcaaa
ggcgcagccagggccatgcgcgagcgcctggcccagctcgacctcgacagctttttgaag
acgaccggcggcaagggcctgcacgtcgtcgtgccgctgaccgccggtcgccagacctgg
gccgacgtcaaggcgttcgcccgcgggatcgcccgcgagttcgccctcgccgaccccgag
cacttcgtcgacgtcgccgccaagcacaagcgccgcggcaagatctacgtcgactacctc
cgcaacgaccgcggcgccaccagcgtggccgcctactcgccgcgggcccgccccggggcc
acggtgtccgtcccgctgcgctggaccgagctggccggcctgaccgatccgcgggcctac
gacctcgacagcaccgtcgcccgcctcgccaagctgcgcggcgacccgtggcgcgagctg
acgcgcgtccgccagtcgctgaccgccgcccgcctacgcgaggtgtccggaaagacatga
DBGET
integrated database retrieval system
