Novosphingobium aromaticivorans: Saro_1695
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Entry
Saro_1695 CDS
T00322
Name
(GenBank) ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase module
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
nar
Novosphingobium aromaticivorans
Pathway
nar03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
nar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Saro_1695
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nar03400
]
Saro_1695
Enzymes [BR:
nar01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Saro_1695
DNA repair and recombination proteins [BR:
nar03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Saro_1695
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
RNA_ligase
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ABD26135
UniProt:
Q2G7N8
LinkDB
All DBs
Position
1779469..1782000
Genome browser
AA seq
843 aa
AA seq
DB search
MGRNDPLAAYNAKRDFARTAEPAGKRKSSATGNLFIVQKHDATRLHWDFRMEVDGVLKSW
AVTRGPSPDPDDKRLAVQTEDHPLEYARFEGIIPEGEYGGGTVMLWDKGTWEPVEGKSAK
DLEKGHLHFRLEGERMKGEWLLVRLKRRGNEKRDNWLLRKLDDAYAGQGDQLVERGLTSV
LTGRTMAEIASDKAGSHSLKGKRGKAFASVMEEAGTHNRKVGKARGKAPSRARRNAPLPA
FQPVQLATLVDTVPDGRQWLYEIKFDGYRALVAVRGTEVRVFTRSGLDWTEKFAPLARHL
AGLKLPSCLIDGEIVAADADGNPDFSRLQAVLKRGHGEQGEGDALSFHAFDLLELEGEDL
KPLPNVERKQKLAALLAGVSPPIHVADHIIGGGEKLLGALCGAGQEGIICKRADAAYAGK
RTQNWLKVKCVARQEFIVVGFTRSSARRRPFASLLLAQREGKALVYKGKVGTGFDEDLLQ
DLATRFEALKVDEGPLDVPITEARGVTWLKPELVAEIAFAEFTAEGRVRHASFVGLREDK
KAADVVPERPAPLVVQPEIVPISNRERVIFPESGQTKGDLADYYAAMAPAMLPFIANRPV
SLVRCPQGRARHCFFQKHDSGSFGEHVHHVPIREKDGNEEEYLFVSDAAGILSCVQMGTI
EFHGWCSLASDVEAPERMVIDLDPDEGLDFNDVKRAARDIRDRLSDLGLVSFAMLSGGKG
VHVVVPLRPDHTWEAHASFAERFARALALAEPDRYVATMSKARRKGRIFIDWLRNRRGST
AVMPYSARARANAPVAVPIAWEELDDFANAHPFCIGDTAGLLKRSEGKSLRGWGMAQQSL
PDV
NT seq
2532 nt
NT seq
+upstream
nt +downstream
nt
atggggcgcaacgatccgctcgccgcctacaacgccaagcgcgacttcgcgcgcactgcg
gaacctgccggcaagcgcaagtccagcgccacgggcaatctcttcatcgtccagaagcac
gacgccacccgcctgcactgggacttccgcatggaggttgatggcgtgctcaagagttgg
gccgtgacccggggccctagccccgatcccgacgacaagcgcctcgctgtccagaccgag
gaccaccccctcgaatacgcccggttcgaaggcatcatccccgaaggcgagtacgggggc
ggcaccgtcatgctctgggacaagggcacctgggagccggtcgagggcaagagcgccaag
gatctggaaaaggggcacctccatttccgcctcgagggggagcggatgaagggcgaatgg
ctgcttgtccgcctcaagcgtcgcggcaatgaaaagcgcgacaactggctcctgcgcaag
ctggacgacgcctatgcgggccagggcgaccagctcgtcgagcgcggcctgaccagcgtc
ctcaccggccgcaccatggccgaaatcgcctccgacaaggctggcagccattcgctcaaa
ggcaagcgcggcaaggccttcgcttcggtgatggaagaagcaggcacgcataaccgcaag
gtcggcaaggcgcgcggcaaggcaccgtccagggcgcgccggaacgcaccgctacccgcc
ttccagcccgtccagctcgcaaccctggtcgatacggtgcccgatgggcgccaatggctg
tacgagatcaagttcgacggctaccgcgcgctcgtcgcagtgcggggaaccgaggtccgc
gtcttcacccgcagcggtctcgactggaccgaaaagttcgcgccgcttgcccgccatctc
gccgggctcaagctgccgtcgtgcctgatcgacggcgagatcgtcgccgccgatgccgat
ggcaatcccgatttctcgcggcttcaagccgtgctcaagcgcgggcatggcgaacagggc
gagggtgatgccttgtcgttccacgccttcgacttgctggaactcgaaggcgaagacctg
aagcccctgcccaatgtagagcgcaagcagaagctcgccgcgctgcttgccggggtctcg
ccgccgatccacgtcgccgaccacatcatcggcggcggcgaaaagctgcttggcgcgctg
tgcggcgcggggcaggaagggatcatctgcaagcgcgcggacgcggcctatgcgggcaag
cggacgcagaactggctgaaggtgaagtgcgtggcccgccaggaattcatcgtcgtcggc
ttcacccggtccagcgcccgccgccgccctttcgcctcgcttctcctggcccagcgcgag
ggaaaggcgctggtctacaagggcaaggtgggcaccggctttgacgaggacctgctgcaa
gacctcgccacccggttcgaagccctcaaggtcgacgaaggtccgctcgatgtgcccata
accgaagcgcgcggcgtgacctggctgaaacccgaactcgtcgcggaaatcgcctttgcc
gaatttaccgccgaaggccgtgtccgccacgccagcttcgtcggtctgcgcgaagacaag
aaggccgcggacgtcgtccccgaacggcccgccccgctggtcgttcagccggaaatcgtg
ccgatcagcaatcgcgagcgggtgatctttcccgaaagcggccagaccaagggcgacctt
gccgattactacgccgcgatggcgcccgcgatgctcccgttcatcgccaaccgccccgtc
agcctcgtccgctgtcctcaggggcgcgcgcgccactgcttcttccagaagcacgatagc
ggctcgttcggcgaacacgtccaccacgttccgatccgcgagaaggatggcaacgaggag
gagtatctgttcgtcagtgacgccgccggcattctctcgtgcgtgcagatgggcacgatc
gagttccacggctggtgttctctggcaagcgatgtcgaggcgcccgaacggatggtcatc
gacctcgatcccgacgaggggctcgatttcaacgacgtcaagcgcgccgcccgcgatatt
cgtgaccgcctgtccgacctcggtctcgtcagctttgccatgctttccggcggcaagggc
gttcacgtcgtcgtgccgctgcggcccgaccacacctgggaggctcacgccagctttgcc
gaacgttttgcccgcgcgctcgccctggcggaacccgatcgctacgtcgcaacgatgagc
aaggccaggcgcaagggccgcatcttcatcgactggctccgcaaccggcgcggcagcacc
gctgtcatgccctattcggcgcgcgcccgcgccaacgctcccgtcgcggtgccgatcgcc
tgggaggaactcgacgacttcgcgaacgcccaccccttctgcatcggcgatacggcagga
ctactcaagcgtagcgaaggcaagtcgctgcgcggctggggaatggcccaacagtccctc
ccggacgtttag
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