Sciurus carolinensis (gray squirrel): 124979220
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Entry
124979220 CDS
T08117
Name
(RefSeq) LOW QUALITY PROTEIN: clathrin heavy chain 1-like
KO
K04646
clathrin heavy chain
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar04142
Lysosome
ncar04144
Endocytosis
ncar04721
Synaptic vesicle cycle
ncar04961
Endocrine and other factor-regulated calcium reabsorption
ncar05016
Huntington disease
ncar05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
124979220
04142 Lysosome
124979220
09150 Organismal Systems
09155 Excretory system
04961 Endocrine and other factor-regulated calcium reabsorption
124979220
09156 Nervous system
04721 Synaptic vesicle cycle
124979220
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
124979220
09164 Neurodegenerative disease
05016 Huntington disease
124979220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ncar04131
]
124979220
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ncar04147
]
124979220
Membrane trafficking [BR:
ncar04131
]
Endocytosis
Clathrin-mediated endocytosis
Clathrin
124979220
Exosome [BR:
ncar04147
]
Exosomal proteins
Proteins found in most exosomes
124979220
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Clathrin
Clathrin_propel
Clathrin_H_link
Clathrin-link
Coatomer_WDAD
TPR_1
Motif
Other DBs
NCBI-GeneID:
124979220
NCBI-ProteinID:
XP_047399640
EnsemblRapid:
ENSSCRG00010008816
LinkDB
All DBs
Position
3:34101644..34165920
Genome browser
AA seq
1682 aa
AA seq
DB search
MAQILPIRFQEHLQLQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVVIIDMNDPSN
PIRRPISADSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVA
LVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGA
MQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGN
QPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISG
ETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENIIPYITNVLQNPDLALRMAVRNNLAGA
EELFARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQYFGI
LLDQGQLNKYESLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKSVDPTLALSVYL
RANVPNKVIQCFAETGQVQKIVLYAKKVGYTPDWIFLLRNVMRISPDQGQQFAQMLVQDE
EPLADITQIVDVFMEYNLIQQCTAFLLDALKNNRPSEGPLQTRLLEMNLMHAPQVADAIL
GNQMFTHYDRAHIAQLCEKAGLLQRALEHFTDLYDIKRAVVHTHLLNPEWLVNYFGSLSV
EDSLECLRAMLSANIRQNLQICVQVASKYHEQLSTQSLIELFESFKSFEGLFYFLGSIVN
FSQDPDVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDR
FDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRLPVVIGGLLDVDCSEDVIKNLILVVRGQF
STDELVAEVEKRNRLKLLLPWLEARIHEGCEEPATHNALAKIYIDSNNNPERFLRENPYY
DSRVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSLSRYLVRRKDPELWGSVL
LESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSE
HRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAIFRKFDVNTS
AVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEV
VQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQ
VGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFAC
VDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTEL
AILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN
HPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFS
KVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLE
KHELIEFRRIAAYLFKGNNRWKQSVELCKKDSLYKDAMQYASESXDTELAEELLQWFLQE
EKRECFGACLFTCYDLLRPDVVLETAWRHNIMDFAMPYFIQVMKEYLTKVDAIKEKVDKL
DASESLRKEEEQATETQPIVYGQPQLMLTAGPSVAVPPQAPFGYGYTAPPYGQPQPGFGY
SM
NT seq
5049 nt
NT seq
+upstream
nt +downstream
nt
atggcccagattctgccaattcgttttcaggagcatcttcagctccagaaccttggtatc
aacccagcaaatattggcttcagtaccctgactatggagtcagacaaattcatctgcatt
agagaaaaagtaggagagcaggctcaggtggtaatcattgatatgaatgacccaagtaat
ccaattcggagaccgatttcagcagacagtgccatcatgaatccagctagcaaagtaatt
gcattgaaagctgggaaaactcttcagatatttaacattgaaatgaaaagtaaaatgaag
gcccataccatgactgatgatgtcaccttttggaaatggatctctttgaatacggttgct
cttgttacggataatgcagtttatcattggagtatggaaggagaatctcaaccagtgaaa
atgtttgatcgccattctagccttgcaggatgccagattatcaattatcgcacagatgca
aagcagaagtggttacttctaactggcatatctgcccagcaaaatcgtgttgtgggagct
atgcagctgtattctgtagataggaaagtgtctcagcccattgaaggacatgcagctagc
tttgcacagtttaagatggaaggaaatgcagaagagtcgactttgttttgttttgcagta
cggggtcaagctggagggaagttacatatcattgaagttggcacaccacctacagggaac
caaccctttccaaagaaggcagtagatgttttctttcctccagaagcacaaaatgacttt
cctgttgcaatgcagattagtgaaaagcatgatgtggtattcttgattacaaagtatggt
tatatacacctctatgatcttgagactggtacctgtatctacatgaatagaatcagtgga
gaaacaatctttgttactgcacctcatgaagccacagctggaataattggagtaaacaga
aaggggcaggttctatcagtgtgtgtagaagaagaaaacataattccttacatcaccaat
gtcctacaaaaccctgatttggctttgaggatggctgtacgtaacaatttagcaggtgct
gaagaactctttgctcggaaatttaatgcgctctttgcccagggaaattattcagaggct
gcaaaggtggctgcgaatgcaccaaagggaatacttcgtactccagacaccatccgtcgg
ttccagagtgtcccagctcagccaggacaaacttctcctcttcttcagtactttggaatc
cttttggaccagggccagttaaacaaatatgaatccttagagctgtgtaggcctgtgctt
cagcaaggtcggaaacaacttctggagaaatggttgaaagaagataagctggaatgttct
gaagaactgggcgatcttgtaaaatctgtggaccctacattggcacttagtgtgtactta
agggctaatgtcccaaataaagtcattcagtgttttgcagaaacaggtcaagtccagaag
attgttttatatgctaaaaaagttggatatactccagactggatctttctgctgagaaat
gtaatgcgtatcagtccagatcagggacagcagtttgctcaaatgttagttcaggatgaa
gagcctcttgctgatatcacacagatcgtggatgttttcatggaatacaatctaatccag
caatgtactgcattcttacttgatgctctaaagaataatcgcccatctgaaggtccttta
cagacgaggttgcttgagatgaaccttatgcatgcacctcaagttgcagatgctattcta
gggaatcagatgttcacacattatgatcgggctcatattgctcagctctgtgaaaaggct
ggattactgcagcgagcattggaacacttcactgatttatatgatataaagcgtgcagtt
gttcatactcatcttcttaaccccgagtggttagtgaattactttgggtccttatcagta
gaagattctctagaatgtctcagagccatgctgtctgctaacattcgtcagaatctgcag
atctgtgttcaggtggcttctaagtatcatgaacaactatcaactcaatctctgattgaa
ctatttgaatcgttcaaaagttttgaaggtctgttttattttctgggatctattgttaac
tttagtcaggacccagatgtgcactttaaatatattcaggcggcttgcaagactgggcag
attaaagaagttgaaagaatctgcagagaaagcaactgctatgatcctgagcgagtcaag
aattttctcaaggaagcaaaactaacagatcagttaccacttatcattgtgtgtgataga
tttgactttgtccatgacttggtgctgtatttatatagaaataatcttcaaaagtatata
gagatatatgtacagaaggttaatccaagtcgacttcctgtggttattggaggattactt
gatgttgattgctctgaagatgttattaaaaatttgattcttgttgtgagaggtcagttt
tctaccgatgagcttgttgctgaagttgagaaaagaaacagattgaaactgctcctgcct
tggctagaggccagaattcatgagggctgtgaggagcctgccacacacaatgcattagcc
aaaatctacattgacagtaataacaacccagagagatttcttcgtgaaaatccctattat
gacagtcgtgttgttggaaagtattgtgagaagagagatccacatctggcttgtgttgct
tatgagcgtggccagtgtgatttggaacttattaatgtttgcaacgagaattcccttttc
aaaagtctttcccgctacctggtacgtcgaaaggatccagaattgtggggtagtgtgctg
ctggaaagcaatccttacaggagacccctaattgatcaggttgtacagacagccttatct
gagactcaggaccctgaagaagtatcagtaactgtcaaggctttcatgactgcagacctt
cctaatgaactcattgagcttttggagaaaattgtccttgataactctgtattcagtgaa
cacaggaatcttcaaaacctccttatcctcactgcaattaaggctgaccgtacacgtgtt
atggagtatattaaccgcctggataattatgatgccccagatattgccaatattgccatc
agcaatgagctctttgaagaagcatttgccattttccgaaagtttgatgtcaacacttca
gcagtgcaggtattgattgaacatattggaaacttggatcgtgcatatgagtttgctgaa
cgctgcaatgaacctgcggtctggagtcaacttgcaaaagcccagttgcagaaaggaatg
gtgaaagaagccattgattcttatatcaaagcagatgatccttcgtcctacatggaagtt
gttcaagcagccaatactagtggaaactgggaagaactggtgaagtacttgcagatggcc
cgtaagaaggctcgggaatcctatgtggagacagaattgatattcgcactggctaaaaca
aaccgccttgcagagttagaagaattcatcaatgggccaaataatgctcatatccagcaa
gttggtgaccgttgttacgatgagaaaatgtatgatgctgctaaattgttgtacaataat
gtttctaattttggacgcttggcatctacccttgttcacttgggtgaatatcaggcagct
gtcgatggagctagaaaagctaatagtacacgaacatggaaagaggtctgctttgcctgt
gtagatgggaaagagttccgtcttgctcagatgtgtgggcttcatattgtagtacatgca
gatgaattagaggaacttatcaactactatcaggatcgtggatattttgaagaactgata
accatgttggaagccgcattaggacttgagcgagctcacatgggcatgtttaccgaatta
gctattctatattctaaatttaagccacagaaaatgagggagcacctggagctattctgg
tccagagtgaacattcctaaggtgctaagagctgcagagcaagctcatctttgggcagaa
ctggtgtttttgtatgacaagtatgaagaatatgataatgccataattaccatgatgaat
catccaacagatgcatggaaagaagggcagttcaaagatatcattaccaaggttgccaat
gtggaactatattacagagcaatacagttctacttagaattcaagcctctgttgttaaat
gatttgctgatggtgctgtctccacggttggatcacactcgtgcagtcaattatttcagc
aaagttaaacagctaccactggtgaaaccatatttgcgttcagttcagaaccacaacaac
aaatctgtgaatgaatcactgaacaacctctttattacagaagaagattatcaggctctg
cgaacatcaatagatgcttatgacaactttgacaatatttcacttgctcagcgtttggaa
aaacatgaactcattgagtttagaagaattgctgcttatctcttcaaaggcaacaatcgt
tggaagcagagtgtagagctgtgcaagaaagacagcctttataaggatgcaatgcagtat
gcgtctgaatctnaagatactgagttggctgaagaactcctacagtggtttttgcaggaa
gaaaaaagagagtgctttggagcttgtctctttacctgttatgatcttttaaggccagac
gttgtcctggaaactgcatggaggcacaacatcatggattttgccatgccttatttcatc
caggtcatgaaggaatatttgaccaaggttgatgcaataaaggaaaaggtggataaatta
gatgcttcagaatcactgagaaaagaagaagaacaagctacagagacacaacctattgtt
tatggtcagccccagctgatgctgacagcaggacccagtgttgcagtccctccccaggca
ccttttggttatggttatactgcaccaccttatgggcagccacagcctggctttggatac
agcatgtga
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integrated database retrieval system
