Neobacillus cucumis: QNK12_21165
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Entry
QNK12_21165 CDS
T09078
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ncm
Neobacillus cucumis
Pathway
ncm03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ncm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
QNK12_21165
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ncm03400
]
QNK12_21165
Enzymes [BR:
ncm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
QNK12_21165
DNA repair and recombination proteins [BR:
ncm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
QNK12_21165
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
mRNA_cap_enzyme
DUF3641
SLFN_AlbA_2
Motif
Other DBs
NCBI-ProteinID:
WHY95018
LinkDB
All DBs
Position
4241794..4243632
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AA seq
612 aa
AA seq
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MKPMLPSLTFDRPVHPDWLYEVKYDGFRALLEWNKKGITLTSRNGKPLIPQFPEIEEFLL
QYQREFVPFLPLQLDGELVLLENPCKANFSGIQVRGRLKSEKKISEQAQNVPCQLMIFDA
LQLSGKPLHAEPFTKRKKELIKLFEKLHFNQEADPYSNQLVQFVKAYDDFEMLWEKVVLF
DGEGIVAKQQNSLWEEGKRSTQWLKYKNWKYVSCFITSFEKTNGYFYVGVYQDKKIHPIG
QVLFGFKPEEKQALQQTIKQNKIKEDEQFIYVEPAICLEVKYLELYDGQLREPHFDRFRF
DLEPADCTNDRFLFQQKNLPKDLDISHPDKPLWDQLNIQKADFILYLREISPYMLPFLEN
RLLTVIRYPHGMFGEPFYQKNCPDYAPEFVETFKHENIDYILCNHLKTLIWLGNQLAIEF
HIPFQTIYSRGPSEIVFDLDPPSKDDFHLAVKAALLIKEVLDQLNLIAFIKTSGNKGLQI
YLPLPENMFTYDDTRLFTSFIADYLISRAPDSFTIERMKKNRGNRLYVDYIQHGEGKTIV
APYSMRGNERGGVATPLYWDEVNEKLESAQFTMKTALTRVRKQGDPFRTYFSTKSVQPFA
PVLDVLKNNKKG
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccgatgcttccaagtctgacttttgatcgtcctgtccatcctgattggctgtac
gaggtgaaatatgatggattccgtgcactattggaatggaataaaaaggggattactcta
acaagcagaaatggcaagcccctcattccacaattcccggaaatagaagaatttttatta
caatatcaacgtgaatttgtgccttttttaccactgcagcttgatggcgagcttgtatta
ttggaaaatccgtgcaaagctaatttttctggcattcaagtacgcggacggttaaagtca
gaaaagaaaattagcgaacaggcacaaaatgtaccatgccagctgatgatatttgatgca
cttcaactatcagggaagccccttcatgcggagccatttacgaaacgaaaaaaagaacta
ataaaattgtttgagaagctccactttaatcaagaggctgatccttactccaatcagtta
gtgcagttcgttaaagcctatgatgattttgagatgctttgggaaaaagttgttcttttt
gatggcgaaggaattgtcgctaagcagcaaaacagtctatgggaagagggaaagcgttca
acccagtggctaaagtataaaaattggaaatatgtgagctgttttatcacctctttcgaa
aaaacaaatgggtacttttacgtaggagtgtatcaggacaaaaagattcatccgattggt
caggtcctttttgggtttaaaccggaggagaagcaggctcttcaacaaacaattaaacaa
aataaaataaaggaagatgagcagtttatttatgtagaaccagctatttgccttgaagta
aaatatttagagttatacgatggacagctccgtgagccgcattttgaccggttccgcttt
gacttagagccagcagattgtaccaatgatcggtttttatttcaacaaaaaaatcttccg
aaggacttagacatttcacatccggataaaccgctttgggatcagctaaatattcaaaag
gcagattttattctttacttaagagaaatatccccctatatgctgccctttttggaaaac
cggcttttaaccgttattcgctacccgcacggaatgtttggggaacctttttaccagaaa
aattgccctgattatgctcctgaatttgtggaaacctttaaacatgaaaatatcgactat
atcctttgtaaccatcttaaaacgctaatctggctcggaaatcaattagccattgaattt
catattccgtttcaaaccatttacagcagagggccaagtgaaattgtctttgatctagat
ccaccgtcaaaggatgattttcatttagcggtaaaagccgctttactaatcaaggaagtc
ctcgatcaattgaacctgattgcctttattaaaacctcaggaaataaaggattgcaaatt
taccttcctttacctgaaaatatgtttacctatgatgatacaaggctgtttacgagcttt
attgccgactacttaatatcacgtgcccctgattcgtttacaatcgagcgaatgaaaaag
aaccgtggaaatcgcttatatgtggactatatccagcatggtgaagggaaaacaattgtt
gcgccttattcgatgaggggaaatgaacgtggcggtgtagccacaccactttactgggat
gaagtaaacgagaagcttgaatcagcgcaatttacaatgaaaaccgccttaacccgggtt
cggaaacaaggggacccgtttcgaacctatttttctacaaaatcagttcagccctttgca
cctgttctcgatgttctaaagaataataaaaaaggataa
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