Nitrosomonas communis: AAW31_01295
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Entry
AAW31_01295 CDS
T03942
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
nco
Nitrosomonas communis
Pathway
nco03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
nco00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AAW31_01295 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nco03021
]
AAW31_01295 (rpoB)
03400 DNA repair and recombination proteins [BR:
nco03400
]
AAW31_01295 (rpoB)
Enzymes [BR:
nco01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AAW31_01295 (rpoB)
Transcription machinery [BR:
nco03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AAW31_01295 (rpoB)
DNA repair and recombination proteins [BR:
nco03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AAW31_01295 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
AKH36752
UniProt:
A0A0F7KDD2
LinkDB
All DBs
Position
complement(295117..299190)
Genome browser
AA seq
1357 aa
AA seq
DB search
MNYSFTEKKRIRKSFAKRASVLPIPFLLATQLESYAAFLQEKVAPNKRTNQGLQAAFNSI
FPIESHSKNARIDFISYSLGTPVFDVKECQQRGLTYASPLRARVRLTLLDKEISKPTVKE
VKEQEVYMGEIPLMTDTGSFIINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSARI
IPYRGSWLDFEFDPKDYVYFRIDRRRKMPVTTLLKAMGCTPEQILADFFVFDHFYFSKNE
ILFDLVPERLRGEVASFDITDDKGKVIAQKDKRITAKHVRELLQTGIKQIAIPEEFLIGK
ILALNIIDKETGEIIALANDEITEAILEKIRRAGIEQISTLYVNDLNYGSFISQTLRIDE
TIDQTAAQVAIYRMMRPGEPPTEEAVTALFNGLFYSPERYDLSVVGRMKFNRRVGRSELT
GSSTLSNSDIIDVIKILVELRNGRGEIDDIDHLGNRRVRSVGELAENQFRAGLARVERAV
KERLSQAESENLMPHDLINAKPVSAAAREFFGSSQLSQFMDQTNPLSEITHKRRISALGP
GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYAQTNEYGFIETPYRKVI
DGKVTDEIVYLSAIEESQYMIAQANARLDSEGKFVDEIVSCRQKNEFTLAPKDQIEYVDV
APAQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPCLRAEKPFVGTGIERVVAVHSGTA
VRAVRGGVVDYVDASRIVVRVHDIETRPGEVGVDIYNLIKYTRSNQNTNINQRPLVKVGD
ILARDDVIADGASTDLGELALGQNMLVAFMPWNGYNFEDSILISEHVVSDARFTSIHIEE
LSIVSRDTKLGTEEITADIPNLSERQLARLDESGIVYIGAEVEAGDVLVGKVTPKGETQL
TPEEKLLRAIFGEKASDVKDTSLRVPSGISGTVIDVQVFTREGVERDKRSKKIIDDELAR
YKKDLADQMRIVETDAFMRIERLLIGKTATGGPKKLAKGTLITKEYLKSIDPHYWFDIRL
ADEDTSIQLEQIKDSTAQMQKMFDSALEEKRKKLTQGDELPPGVQKMVKVYVAVKRRLQP
GDKMAGRHGNKGVISRIVPVEDMPYMADGTPVDIVLNPLGVPSRMNVGQILEVHLGWASK
GMGKKINEMLREQREITELRALLDKIYNSSGKREEINSLNDEEILELAKNLVDGVPFATP
VFDGATETEIKDMLELAGLPRSGQITLYDGRTGAAFDRPVTVGYMHVLKLHHLVDDKMHA
RSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKVY
ESIVKGDHKIDAGMPESFNVLVKEIRSLGLDVDLEQH
NT seq
4074 nt
NT seq
+upstream
nt +downstream
nt
atgaactattcgttcactgagaaaaaacgcattcgaaaaagttttgctaaacgtgccagc
gtcttaccaatcccttttcttctcgccactcaacttgaatcatacgcagcttttttgcaa
gagaaagtagcgcctaataagcgtactaatcaagggttgcaggcagcgtttaattcaatt
tttccaattgagagtcattcgaaaaatgctcgcattgattttattagctattctcttggg
acacctgtatttgatgttaaggaatgccagcaacgaggcttgacttatgcatctccttta
cgcgccagagtacgcttgacgcttttagataaagaaatttctaaaccgacagtaaaagaa
gttaaggagcaagaagtatacatgggagagatcccgctcatgacagacactggctcattt
attattaatggaacggagcgagtaattgtttctcagctgcaccgttctccgggtgtgttt
ttcgagcatgatcgtggaaaaacgcattcgtcaggtaagctgcttttttctgcacggatt
attccttatcgaggctcatggcttgatttcgagtttgatcccaaagattatgtctatttt
cgcattgaccgccgccgcaaaatgccggtgacaactttattaaaagcaatgggctgtacg
ccggaacaaattctcgctgatttctttgtatttgatcatttttatttttctaaaaatgaa
attttatttgatttagtgcctgaacgtttgcggggtgaagtagcaagttttgatattact
gatgataaaggtaaagtaattgctcaaaaagataaacgtataacagcaaaacatgttcga
gaattattgcaaactggtataaaacagatcgcgattccagaagagtttttgattggaaaa
atcctggcactaaatattatagataaggaaaccggtgaaattatagcgctggctaacgac
gaaattacagaagctatacttgagaaaataagacgagctggaattgagcaaattagtacg
ctgtatgtgaatgatcttaattacggttcttttatttcgcagacattgagaatagatgaa
accattgatcagactgcagctcaagtggcaatttatcggatgatgcgtcctggcgaacct
cctactgaggaagctgttactgctttgtttaacggattattctattcacccgagcgctat
gatttgtcagtagtggggcgcatgaagttcaatcgccgtgttgggcgctcagagctgaca
ggttcttctaccttatctaattctgatattatcgatgtgatcaaaatattggtggagtta
cgcaatggtcgtggagagatagatgatattgatcatttggggaatcgtcgtgttcgttca
gttggagaattagctgagaatcagttccgagctggattggcgcgagtggaaagggcggtt
aaagaacggcttagtcaggcagaatcagagaatcttatgcctcatgatttaatcaatgct
aaaccggtatcggctgcagcgcgtgaattttttggctctagtcaattatcccaatttatg
gatcaaacgaaccctttatcagagattacgcataaaagacgtatttctgcattggggcca
ggtggtttaacacgtgaacgagcaggttttgaagtacgcgatgtccatccaactcactat
ggacgtgtctgtcctattgagacgccggaagggcccaatatcggtctgattaattcgctg
gcactttatgcacaaactaatgaatatggatttattgaaacaccctatagaaaagtaata
gatgggaaagtaactgacgagatcgtttatctttctgctattgaagaaagtcaatatatg
attgctcaagcgaatgcaaggcttgattcagaaggaaagtttgtagatgaaatcgtttca
tgtcgtcaaaagaatgaattcacattggcgcctaaagatcaaatcgagtatgtagatgtt
gcgccagctcagattgtttccgttgccgcttcgttgattccttttttagagcatgatgat
gccaaccgtgctttgatgggttctaatatgcagcgacaagctgttccttgtttacgtgcg
gagaaaccatttgttgggactggaatagaacgggttgtggcagttcattctggtaccgct
gtgagagcagtgcgtggaggagtcgtggattatgtagatgcaagccgtatcgtagtgcgc
gtgcatgatattgaaacacgtccaggagaggtgggtgtagatatttataatttgattaaa
tatacccgttcaaatcagaataccaatattaatcaacgcccattagtgaaagtaggtgat
attctggcgcgcgacgatgtcatcgccgatggtgcatcgactgacttgggcgaacttgca
ttagggcaaaatatgttggtggcttttatgccatggaatggatataactttgaggattcc
attcttatctctgagcatgtcgtatctgatgctcgttttacctccattcacattgaggaa
ttatcaatagtaagtcgtgatactaagctgggtacagaagaaattactgctgatattccc
aatttatctgagcgtcaactcgcacgcctggatgaatccgggattgtttatatcggtgct
gaagttgaagcaggtgatgtattggtgggtaaagttactccgaaaggtgaaacgcaatta
accccagaggagaagttattacgagccatttttggtgaaaaagcttctgatgttaaagat
acttctttgcgcgtaccttccgggatatccggtaccgtgattgatgtgcaagtatttacc
cgagagggggtagaacgcgacaagcgttctaagaaaattatcgatgatgaattggctcgc
tataaaaaagatctggctgaccagatgcgcatagtggaaacagatgcatttatgcgcata
gagcgtttacttatcggcaaaacagcaaccggtggtcctaagaagcttgctaaagggacg
ttaatcacgaaagaatatctgaaaagtattgatccacactattggtttgatatccgcttg
gctgatgaagataccagcatacagttagagcagataaaagacagcacggcacaaatgcag
aaaatgtttgatagtgctcttgaggaaaaaagaaaaaaacttacacaaggggatgaattg
ccaccaggtgtccagaaaatggtcaaagtttatgttgccgttaaaaggcgtctacagcct
ggagataaaatggcgggccgtcatggaaataaaggtgtcatttcaagaattgtgcctgta
gaagatatgccttatatggccgatggtactcctgttgatatcgtattgaatcctttaggc
gtgccatcgcgtatgaatgtaggacagatattggaagttcatttaggatgggcgtcaaaa
ggaatgggtaagaaaattaatgagatgttgcgtgagcagagagaaattaccgagctcaga
gcgcttctcgataaaatctataacagcagcggtaagagagaagaaattaattcattaaat
gacgaagaaatattagagctcgcaaaaaatttagttgatggcgtaccctttgcgacgcct
gtttttgatggtgcaacagaaactgaaataaaggatatgcttgaattagctggtttgccc
cgatcagggcagataactctttatgatggtagaacaggtgctgctttcgatcgacctgtt
accgtaggttatatgcatgtgcttaagcttcaccatctagtggatgacaaaatgcatgct
cgttctacgggtccctatagcttagtgacgcaacaaccgcttggcggcaaagctcaattt
ggcggccaacgttttggtgaaatggaggtatgggcgctagaagcatacggagctgcctat
accttgcaggaaatgttgaccgttaagtcagatgatgtgaatggacgtaccaaggtatat
gaaagtattgtcaagggagatcacaaaatagatgcgggaatgccggaatcatttaatgta
ttggtgaaagaaattcgatcgctggggttggatgttgatttggaacaacattga
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integrated database retrieval system
