Candidatus Nitrosocaldus cavascurensis: NCAV_0293
Help
Entry
NCAV_0293 CDS
T05329
Symbol
tbp
Name
(GenBank) TATA-box-binding protein
KO
K03120
transcription initiation factor TFIID TATA-box-binding protein
Organism
ncv
Candidatus Nitrosocaldus cavascurensis
Pathway
ncv03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
ncv00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
NCAV_0293 (tbp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ncv03000
]
NCAV_0293 (tbp)
03021 Transcription machinery [BR:
ncv03021
]
NCAV_0293 (tbp)
Transcription factors [BR:
ncv03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
TATA-binding proteins
NCAV_0293 (tbp)
Transcription machinery [BR:
ncv03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
NCAV_0293 (tbp)
RNA polymerase III system
TFIIIB
NCAV_0293 (tbp)
RNA polymerase I system
SL1/TIF-1B
NCAV_0293 (tbp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TBP
DUF3378
RTT107_BRCT_5
Motif
Other DBs
NCBI-ProteinID:
SPC33487
UniProt:
A0A2K5APE2
LinkDB
All DBs
Position
NCAV:269905..270498
Genome browser
AA seq
197 aa
AA seq
DB search
MIYIPLIYKIGMPQTKPIISIENVVASATVNQTINLNHITQLFPDVEYHPDQFPGLVFRL
KAPKTATLIFSSGKMVCTGSKSEEQAIKAVKTVVAKLRKAGIEIDNEPIIEIQNIVASAS
LGGKIHLEQAARVLPRSMYEPEQFPGLIHRMLDPKTVILLFASGKLVCTGAKKEEEVYRA
VNNLHIVLEEKGLMMYR
NT seq
594 nt
NT seq
+upstream
nt +downstream
nt
atgatttatataccccttatatataagataggtatgccccaaacaaaacccataataagt
atagagaatgtggttgcatctgcaactgtgaaccagaccataaaccttaaccatataaca
caactcttcccagatgttgagtaccatccagaccagttcccaggcttggtcttcaggctc
aaggcaccaaagacagcaactctgatattcagttctggtaagatggtgtgtactggttca
aagtctgaggagcaggctataaaggctgtgaagactgtagtagcaaagctcaggaaggct
ggtatagagatagataatgagcctataatagagatacagaatatagttgcatctgcaagc
ctgggaggaaagatacatctggagcaggctgctagggtactcccaaggagcatgtatgag
ccagagcagttcccaggcttgatacacaggatgctagacccaaagacagttatcctgcta
tttgcatctggcaagttggtatgcactggagcaaagaaggaggaggaggtctatagagca
gtcaataacctacacatagtgttggaggagaagggactgatgatgtatagatag
DBGET
integrated database retrieval system