KEGG   Candidatus Nitrosocaldus cavascurensis: NCAV_0293
Entry
NCAV_0293         CDS       T05329                                 
Symbol
tbp
Name
(GenBank) TATA-box-binding protein
  KO
K03120  transcription initiation factor TFIID TATA-box-binding protein
Organism
ncv  Candidatus Nitrosocaldus cavascurensis
Pathway
ncv03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:ncv00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    NCAV_0293 (tbp)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:ncv03000]
    NCAV_0293 (tbp)
   03021 Transcription machinery [BR:ncv03021]
    NCAV_0293 (tbp)
Transcription factors [BR:ncv03000]
 Eukaryotic type
  beta-Scaffold factors with minor groove contacts
   TATA-binding proteins
    NCAV_0293 (tbp)
Transcription machinery [BR:ncv03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     NCAV_0293 (tbp)
  RNA polymerase III system
    TFIIIB
     NCAV_0293 (tbp)
  RNA polymerase I system
    SL1/TIF-1B
     NCAV_0293 (tbp)
SSDB
Motif
Pfam: TBP DUF3378 RTT107_BRCT_5
Other DBs
NCBI-ProteinID: SPC33487
UniProt: A0A2K5APE2
LinkDB
Position
NCAV:269905..270498
AA seq 197 aa
MIYIPLIYKIGMPQTKPIISIENVVASATVNQTINLNHITQLFPDVEYHPDQFPGLVFRL
KAPKTATLIFSSGKMVCTGSKSEEQAIKAVKTVVAKLRKAGIEIDNEPIIEIQNIVASAS
LGGKIHLEQAARVLPRSMYEPEQFPGLIHRMLDPKTVILLFASGKLVCTGAKKEEEVYRA
VNNLHIVLEEKGLMMYR
NT seq 594 nt   +upstreamnt  +downstreamnt
atgatttatataccccttatatataagataggtatgccccaaacaaaacccataataagt
atagagaatgtggttgcatctgcaactgtgaaccagaccataaaccttaaccatataaca
caactcttcccagatgttgagtaccatccagaccagttcccaggcttggtcttcaggctc
aaggcaccaaagacagcaactctgatattcagttctggtaagatggtgtgtactggttca
aagtctgaggagcaggctataaaggctgtgaagactgtagtagcaaagctcaggaaggct
ggtatagagatagataatgagcctataatagagatacagaatatagttgcatctgcaagc
ctgggaggaaagatacatctggagcaggctgctagggtactcccaaggagcatgtatgag
ccagagcagttcccaggcttgatacacaggatgctagacccaaagacagttatcctgcta
tttgcatctggcaagttggtatgcactggagcaaagaaggaggaggaggtctatagagca
gtcaataacctacacatagtgttggaggagaagggactgatgatgtatagatag

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