Nocardia cyriacigeorgica: NOCYR_0694
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Entry
NOCYR_0694 CDS
T01756
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ncy
Nocardia cyriacigeorgica
Pathway
ncy03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ncy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
NOCYR_0694
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ncy03400
]
NOCYR_0694
Enzymes [BR:
ncy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
NOCYR_0694
DNA repair and recombination proteins [BR:
ncy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
NOCYR_0694
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
CCF61508
UniProt:
H6QYV3
LinkDB
All DBs
Position
743512..745872
Genome browser
AA seq
786 aa
AA seq
DB search
MNAGSRRRATDNGSRRSFRDAAGEPVIRIELSNLDKVLYPATGTTKGEVIAYYTAIAPAM
LPHVAGRPVTRKRWPNGVEESSFFEKNLAEHAPDWLPRRAMRHSDRTVTYPLIDSEAGLA
WIGQQASLEVHVPQWRFDGEHMGPATRLVFDLDPGPGAGLAECATVALEVRDMVDRIGLR
AFPVTSGSKGIHLYVPLDRVLSPGGASTVAKQVATNLEKMHPELVTATMAKKVRTGKVFL
DWSQNNPAKTTIAPYSMRGRAQPNVAAPRSWAEIEDRESLRHLRFDEVLARFQADGDLLA
GLDPPISQAGASRPDPLSVYRSMRDPARTPEPVPAHPPTPGPGNRYVVQEHHARRLHWDV
RLERDGVLVSWAVPKGPPTDTKENRLAVHTEDHPLEYLDFHGSIPKGEYGAGTMTIWDSG
TYETEKWRDDEVIVVMRGERLHGRYALIRTGGKNWLMHLMKEQPAEGDGAAPSGNGRRAA
KESAEVPERSGGADLPRGLAPMLATTGEVAELDPKEWAFETKWDGYRLILEFDHGTPTLR
SRAGNIVTDRYPKIAALAEELAGHRVVLDGEAVVFDDNGVANLALLQADTRRAELVAFDL
LYLDGTSLIRKRYSDRRRVLEALAATTSALSVPPQLEGTGEDALNASLEVGAEGVVAKRK
DSVYLPGKRGHSWVKQRNWQTQQVLVGGYRGSAARPFASLLVGIPDNGKLIYVGRVGTGF
SEDEMRALATRLQRRRRKTSPFVNEMSREETKDATWVTPEISGTVRFMNWTDSGRLWHPA
WLGRAD
NT seq
2361 nt
NT seq
+upstream
nt +downstream
nt
atgaacgccggttcccgccgccgggccacggacaacgggtcgcgccgcagcttccgcgat
gcggcgggcgaacccgtcattcggatcgaactgagcaacctcgacaaggtgctctacccg
gcgaccgggaccaccaaaggcgaggtcatcgcctattacaccgcgattgcccccgccatg
ctgccgcatgtggccggccgcccggtcacccggaaacgctggcccaatggcgtcgaggaa
tcctccttcttcgagaagaacctcgccgaacatgcacccgactggctgccccggcgggcg
atgcgccattccgaccgcaccgtcacctatccgctgatcgattccgaagccggcctggcc
tggatcggccagcaggcctcgctggaagtgcatgtgccgcaatggcgtttcgacggcgag
cacatgggcccggccacccggctggtcttcgatctcgatccgggccccggcgccgggctg
gccgaatgcgccacggtggcgctcgaggtgcgcgatatggtcgaccggatcgggttgcgc
gcgttcccggtcaccagtggtagcaagggaattcacctgtatgtgccgctggaccgggtg
ctgagcccgggcggtgcgtccaccgtcgccaagcaggtcgccaccaatctggagaaaatg
catcccgaactcgtcacggcgacgatggcgaagaaggtgcgcaccggaaaggtcttcctg
gactggagtcagaacaatccggccaagaccaccatcgcgccgtactcgatgcgcgggcgc
gcgcagcccaacgttgccgcgccgcgcagctgggcggagatcgaggaccgggaatcgttg
cggcacctacgcttcgacgaggtgctggcccgtttccaagccgacggtgatctgttggcg
gggctcgatccgccgatctcgcaggccggtgcctcccggccggacccgctgagcgtctac
cggtccatgcgcgaccccgcgcgcacgccggaacccgtgcccgcgcacccgccgacgccc
gggcccggcaaccgctacgtcgtccaggagcatcacgcccgccgcctgcactgggatgtg
cggctggaacgcgacggcgtgctggtgtcgtgggccgtgccgaagggcccacccaccgac
accaaggagaaccgcctcgccgtgcacaccgaggaccatccgctggagtacctcgatttc
cacggctccattccgaagggtgagtacggcgccggaaccatgacgatctgggactcgggc
acctacgagaccgagaagtggcgcgacgacgaagtgatcgtggtgatgcgcggcgaacgg
ttgcacggccgatacgcgctgatccgcaccggcggcaagaactggctgatgcacctcatg
aaggagcagccggccgaaggtgacggggccgcgccgtctggcaatggacggcgagcggcg
aaagagtccgccgaagtgcccgagcgatctggtggtgcggacctaccccgcgggctcgcg
ccgatgctcgccaccacgggcgaggtcgccgaactggatccgaaggaatgggccttcgaa
accaaatgggacggctaccggctcatcctcgaattcgaccacggcacacccacattgcgc
agccgggcgggcaatatcgtcaccgaccgatacccgaagatcgccgccttggccgaggaa
ttggccgggcatcgtgtagtgctcgacggtgaagcggtcgtgttcgacgacaacggtgtc
gccaatctggctctgctgcaggccgatacccgccgcgccgaactcgtcgccttcgatctg
ctctacctcgacggcacctcgctgatccgcaaacgctacagcgaccggcgccgggtgctc
gaggcgctcgccgccacgacatcagcgctgtcggtcccgccacagctcgagggcaccggc
gaagacgcgctcaacgccagcctcgaggtgggtgccgaaggtgtcgtcgccaagcgcaag
gactcggtctacctgccgggcaaacgcggccactcctgggtcaaacagcgcaactggcaa
acccagcaggtgctcgtcggcggctaccggggcagcgcggcgcgaccgttcgcctctttg
ctggtcgggatccccgacaacgggaaactcatctacgtcggccgagtcggcaccggattc
agcgaggacgagatgcgcgcgctcgccacacggctgcagcgccgccgccgcaagaccagc
ccgttcgtcaacgagatgtcgcgcgaggaaaccaaggacgcgacctgggtgacaccggag
atatcgggcacggtccgattcatgaactggaccgacagcgggcggctgtggcatccggcc
tggttggggcgggccgactga
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