Nocardiopsis dassonvillei: Ndas_3301
Help
Entry
Ndas_3301 CDS
T01248
Name
(GenBank) ATP-dependent DNA helicase, RecQ family
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
nda
Nocardiopsis dassonvillei
Pathway
nda03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nda00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Ndas_3301
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nda03019
]
Ndas_3301
03400 DNA repair and recombination proteins [BR:
nda03400
]
Ndas_3301
Enzymes [BR:
nda01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Ndas_3301
Messenger RNA biogenesis [BR:
nda03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Ndas_3301
DNA repair and recombination proteins [BR:
nda03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Ndas_3301
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
MarR_2
Pribosyltran
DUF4350
HTH_IclR
Motif
Other DBs
NCBI-ProteinID:
ADH68707
UniProt:
D7B317
LinkDB
All DBs
Position
1:complement(3938387..3940558)
Genome browser
AA seq
723 aa
AA seq
DB search
MATPTPDSTVPTTASDGALRERAEAHLRALAGDSARLREDQWTAIHALAAEHRRALVVQR
TGWGKSAVYFVATALRRAEGAGPTVIVSPLLALMRNQIAAAERAGIHARTINSSNTTDWE
NAYADVAAGRVDVLLVSPERLNNPEFRDRVLPELAAGAGLVVIDEAHCVSDWGHDFRPDY
RRIRSLLHDLPEGVPVLATTATANERVTRDVAEQLQAGGERADTLVLRGSLERESLRLAV
VRLPDPTARLSWLAEHLPKIQGSGIVYALTVSAAQETARFLAQQGMEVRAYTGQTDPDER
REAEDDLLANRVKALVATSALGMGFDKPDLGFVVHLGAPQSPISYYQQVGRAGRGVQRAE
AVLLPGREDTRIWEYFAGLSFPPEQTVRQTLDALAEAGGPLSVAHLETRVDLRRTRLEQM
LKVLDVDGAVRRVRGGWEATGRPWTYDAERYAAVSRAREREQRAMLDYLDLDTCRMEFLR
RQLDDPEAAPCGRCDVCTGEYWPADVDSTRREAAAEHLDRPGTPIAPRRQWPTGMSALGV
DLSGRIAEELRAGEGRALGRLTDIGWGNELRRVLAADAPDAPVDERVLQGVVRVLADWNW
DQRPVGVVAMPSLTRPRMITDLAERLSRLGRLTHVGTLGYRTERGTGPRRHNSAMRLEQV
HAALVAGEELTERMARLQEHTPGPVLLVDDVTDTGWSLTVGAALLRGAGAPQVLPLTLAT
AGG
NT seq
2172 nt
NT seq
+upstream
nt +downstream
nt
atggccacacccacccctgacagcaccgttcccaccaccgcgtccgacggcgcgctgcgc
gagcgcgccgaggcgcacctgcgcgccctggccggggactccgcccggctgcgcgaggac
cagtggaccgccatccacgccctggccgccgagcaccgcagagccctcgtcgtccagcgc
accggatggggaaagtcggcggtgtacttcgtggccaccgccctgcggcgcgccgagggg
gcgggccccaccgtcatcgtctccccgctgctggcgctgatgcgcaaccagatcgccgcg
gccgagcgcgcgggcatccacgcgcgcaccatcaacagctccaacaccaccgactgggag
aacgcctacgccgacgtggccgcgggccgggtcgacgtcctgctggtcagccccgagcgc
ctcaacaaccccgagttccgcgaccgggtcctgcccgagctggccgcgggcgcaggcctg
gtcgtcatcgacgaggcccactgcgtctccgactgggggcacgacttccgccccgactac
cggcgcatccgctccctgctgcacgacctgcccgagggggttccggtgctggccaccacc
gccaccgccaacgagcgcgtcacccgcgacgtggccgagcagctccaggcgggcggcgag
cgcgcggacaccctggtcctgcgcggttccctggagcgcgagagcctgcgcctggccgtc
gtccggctgcccgaccccaccgcccggctcagctggctggccgagcacctgcccaagatc
cagggctcgggcatcgtctacgcgctcaccgtcagcgccgcccaggagaccgcccgcttc
ctcgcccagcagggcatggaggtgcgcgcctacaccggccagaccgaccccgacgagcgc
cgcgaggccgaggacgacctgctcgccaaccgggtcaaggcgctggtcgccaccagcgcg
ctgggcatgggcttcgacaagcccgacctgggcttcgtcgtccacctgggcgccccccag
tccccgatctcctactaccagcaggtgggccgcgccgggcgcggtgtacagcgggccgag
gcggtcctgctgcccggccgcgaggacacccgcatctgggagtacttcgccggactgtcc
ttcccgcccgagcagaccgtgcgccagaccctggacgcgctcgccgaggcgggcggaccg
ctgtccgtcgcgcacctggagacccgggtggacctgcgccgcacccgcctggagcagatg
ctcaaggtgctggacgtggacggggccgtgcgccgggtgcggggcggctgggaggccacc
ggccggccgtggacctacgacgccgagcggtacgcggccgtcagccgggcgcgcgagcgc
gagcagcgcgccatgctcgactacctcgacctggacacctgccggatggagttcctgcgc
cgccagctggacgaccccgaggccgcgccctgcggacgctgcgacgtgtgcacgggcgag
tactggcccgcggacgtggactccacccggcgcgaggccgcggccgagcacctggaccgg
cccggcacgcccatcgcgccccggcgccagtggccgaccgggatgtccgccctgggcgtg
gacctgtccggcaggatcgccgaggagctgcgggcgggggagggccgcgccctgggccgc
ctcaccgacatcggctggggcaacgagctgcgccgcgtcctggccgccgacgcccccgac
gcgcccgtggacgagcgcgtgctccagggcgtggtgcgtgtcctggccgactggaactgg
gaccagcgccccgtcggcgtggtggcgatgccctcgctcacccgtcccaggatgatcacc
gacctggccgagcggctgtcccggctcgggcggctgacgcacgtggggacgctggggtac
cgcaccgagcggggcaccgggccgcgcaggcacaacagcgccatgcgcctggaacaggtc
cacgccgccctggtggcgggggaggagctcaccgagcggatggcgcggctacaggagcac
acccccgggccggtgctgctggtcgacgacgtcaccgacaccggctggagcctgaccgtg
ggcgccgccctgctccgcggggccggggcgccccaggtgctgccgctcaccctggccacc
gcaggaggatga
DBGET
integrated database retrieval system
