KEGG   Novosphingobium decolorationis: HT578_15485
Entry
HT578_15485       CDS       T07993                                 
Name
(GenBank) ligase-associated DNA damage response DEXH box helicase
  KO
K03724  ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
Organism
ndr  Novosphingobium decolorationis
Brite
KEGG Orthology (KO) [BR:ndr00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ndr03400]
    HT578_15485
Enzymes [BR:ndr01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     HT578_15485
    5.6.2.6  RNA 3'-5' helicase
     HT578_15485
DNA repair and recombination proteins [BR:ndr03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   DNA helicases
    HT578_15485
SSDB
Motif
Pfam: DEAD_assoc Lhr_WH DEAD Helicase_C ResIII
Other DBs
NCBI-ProteinID: QVM84902
LinkDB
Position
3369538..3372000
AA seq 820 aa
MAEQAVPPEITAWFAGRDWRVRRHQAQMLEAADAGHHALLVADTGAGKTLAGFLPTLCDF
TPSRLKDKAPPEGLHTLYISPLKALAHDVQRNLIAPIEEMELPIRVETRSGDTPSDRKAR
QRARPPHVLLTTPESLSLLLSYPEAAEMFASLRRVVIDEVHAFAAGKRGDLLALSLARLQ
ALAPGLQRAALSATLADPDAYRGWLAPWGDLDSVALVEGEAGAAPLVEILVPEDARIPWS
GHAATWAIPQLMERIAAHRTTLIFTNTRFLAEYIFQELWSANEDTLPIGIHHGSLSKEAR
RKVEGAMARGELRALVCTASLDLGIDWGDIDLVVQMGAPKGSSRLLQRIGRANHRLDSPS
EALLVPGNRFEFLEAFAAQEAVREGQRDGEGFRPGGLDVLAQHVMGRACAGPFTEAEVLD
EVRSSAAYAWVDAAILQRVLEFAATGGYALRAYDRFRRIVKDRDGLWRLTHPEHAARHRL
NAGIIVDSEMLEVRFRNGRSLGKVEEGFGASLEPGDTFRFAGLDLEVESLKDLDLVVRAA
KRSATIPSYMGQRMPISTHLAGRVQAMLADRAGWARFPDDVREWLEVQDWRSHLPAPGRL
LVESFPHRDLAYTAFYTFEGWNANQSLGMLITRRMEDRGLGPLGFVATDYTLIVWSLKAV
AEPAALLSPDILTHEFVDWVQQSYLLRRAFREVAVISGLVERQQPGKRKSGRQVTFSTDL
IYDVLSKYEPDHVLIEAAWADARARLTDVARVGDLLERAAREIDHVHLERISPLAVPALS
MIGRESLPAGAADDDLLFEAETLAGLAMQVEPTSEDPEAL
NT seq 2463 nt   +upstreamnt  +downstreamnt
atggccgagcaggcagtacccccggagatcacggcgtggttcgcaggccgcgactggcgc
gtgcggcgccaccaggcccagatgctggaggccgccgatgccggacaccatgccctgctc
gttgccgataccggcgcgggcaagacgctcgcaggtttcctgcccacgctttgcgacttc
acgccgtcacggctgaaggacaaggcgccgcccgaagggctgcacacgctgtacatctcg
ccgctcaaggcgcttgcgcatgacgttcagcgcaacctgattgccccgatcgaggagatg
gagctgccgatccgcgtcgagacgcgcagcggggacacgccgtcggatcgcaaggcccgc
cagcgcgcccggcccccgcatgtgctgctgacgacgcccgaatcgctctcgctgctgctg
agctatcccgaagcggcggagatgtttgccagcctgcgccgggtggtgatcgacgaggtc
catgccttcgcggcgggcaagcgtggcgatctgcttgcgctttcgctggcacggctccag
gcgctggcgccggggctgcaacgtgcggcgctttccgctacgctggccgatcccgatgcc
taccggggctggctcgcgccctggggggacctcgattcggtcgcgcttgtcgaaggcgag
gcgggggcggctccactcgtcgagatcctggtgcccgaggacgcccgcatcccctggagc
ggacacgcggccacctgggcgatcccgcagctcatggagcggattgccgcgcatcgtacg
acgctgatcttcaccaatacccgcttccttgccgagtacatcttccaggaactgtggagc
gcgaacgaggacacgctgcctatcggcatccaccatggctcgctgtccaaggaggcgcgg
cgcaaggtggaaggggccatggcgcggggcgaattgcgcgctcttgtctgtaccgccagt
ctcgatctcggcatcgactggggcgatattgaccttgtcgtgcagatgggcgcgcccaag
ggctcctcgcgccttttgcagcggatcgggcgcgccaaccaccggctcgacagcccgagc
gaggcgctgctggtgccgggcaaccgtttcgagtttctcgaggccttcgcagcccaggaa
gcggtccgggagggccagcgcgatggtgagggctttcggccgggcgggctcgacgtgctg
gcccagcatgtcatgggccgggcctgcgcggggccgttcaccgaggccgaagtgctcgat
gaagtgcgctccagcgcggcctatgcctgggtggacgcggccatcctgcagcgcgtactc
gaattcgcggcgaccggggggtacgcgctgcgggcctatgatcggtttcggcgcatcgtg
aaggaccgcgatgggctctggcgcctcacccaccccgagcacgcggcgcgccatcgcctg
aatgcgggtattatcgtcgattccgaaatgctcgaggtgcgctttcgaaatggccgctct
ctgggcaaggtcgaggaaggcttcggggcgagcctggagccgggcgatacgtttcgcttt
gccgggctcgaccttgaggtcgaatcgctcaaggacctcgatctcgttgtgcgcgcggcg
aaacgctcggccacgatccccagttacatgggccagcgcatgccgatctcgacgcatctg
gcgggacgtgtccaggcgatgctggcggaccgtgcaggctgggcgcggttccccgacgat
gtacgcgaatggctggaagtgcaggactggcgttcgcacctgcctgcgcccgggcggctg
ttggtcgagagcttcccgcaccgtgatctggcctataccgcgttctatactttcgagggc
tggaacgcgaaccagtcgctggggatgctgattacccggcgcatggaggacagggggctt
gggccgctgggcttcgtggcgacggactatacgctcatcgtgtggagcttgaaggcggtg
gcagagcccgccgcgctgctttcacccgatatcctgacccatgaattcgtcgactgggtg
cagcagagttatctcctgcggcgggccttccgggaggtggcggtcatctccggcctggtc
gagcgccagcagccgggtaagcgcaaatcggggcggcaggtcacgttctcgaccgacctc
atctatgatgtgctctcgaagtacgagcctgatcacgtgttgatcgaggcggcctgggcc
gatgcgcgcgcgcggttgaccgacgtggcgcgggtgggggacctgctcgaacgcgcggcg
cgggaaatcgaccatgtccacctggagcggatcagtccgctggcggtcccggcgctctcc
atgatcggacgcgagagcctgcctgcaggcgctgccgacgatgatctcctgttcgaggcc
gagacgctggcggggcttgccatgcaggtggagcccacgagcgaggatcctgaggccttg
tga

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