Nothobranchius furzeri (turquoise killifish): 107375846
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Entry
107375846 CDS
T05163
Name
(RefSeq) CCR4-NOT transcription complex subunit 6
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
nfu
Nothobranchius furzeri (turquoise killifish)
Pathway
nfu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nfu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107375846
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nfu03019
]
107375846
Enzymes [BR:
nfu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
107375846
Messenger RNA biogenesis [BR:
nfu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107375846
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
107375846
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
LRR_4
LRR_8
LRR_1
LRR_6
Motif
Other DBs
NCBI-GeneID:
107375846
NCBI-ProteinID:
XP_015800111
UniProt:
A0A1A7ZMK5
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Position
sgr01:25436756..25466388
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AA seq
558 aa
AA seq
DB search
MPKEKYDPPDPRRMYTIMSSEEAANGKKSYWAELEISGRVRSLSTALWSLTHLTALHLSD
NSLSRIPPDIAKLHNLVYLDLSSNKIRSLPAELGNMVSLRELLLNNNQLRVLPFELGKLF
QLQTLGLKGNPLAQDIMSLYQEPDGTRRLLSYLLDNLAGAIKRIPTEQPPARSWISLQEP
DRTRPSTLFSVMCYNVLCDKYATRQLYGYCPTWALNWEYRKKSIMQEILGCNADIISLQE
VETEQYYSFFLPELKEQGYDGFFSPKSRARTMSESDRKHVDGCAIFFKTEKFGAVQRHTV
EFNQLAMANSEGSEAMLNRVMTKDNIGVAVLLEVRKEIMEISSGKSLHGMEKQLLLVANA
HMHWDPEYSDVKLVQTMMFLSEVKNIVDKATRSFKLSSSGETNAIPLVLCADLNSLPDSG
VVEYLSTGGVDCTHKDFKELRYSDSLTKFNCNGKNSTSNGKITHGFKLKSAYENGLMPYT
NYTFDFKGVIDYVFYSKPHLNVLGILGPLDPHWLVENNVSGCPHPHIPSDHFSLFAQLEL
LLPALPPQVNGLHLPARR
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atgcccaaggaaaaatatgacccgccggatccaaggcggatgtacacaattatgtccagc
gaggaggcagcaaatgggaagaaatcatactgggctgagctggaaatcagtggtcgagtg
aggagtcttagcacagccctgtggtctctcacccacctcactgcccttcacctcagtgac
aactctctgtcacgaatcccgccagacatagccaaactacacaacctggtgtacctggat
ctctcatccaataagatcaggagcctgccggcggagctcggcaacatggtgtctctcagg
gaattgcttttaaataacaaccagttgcgagttctcccctttgaactgggaaaactgttt
cagttacagacactggggttaaaaggaaacccacttgcacaagatattatgagcctctac
caggaacccgatggcacacggagactgctcagctacttgttagacaatctggcaggagct
atcaagcgcataccaaccgagcagccccctgcccgatcgtggatctctcttcaggaaccc
gaccgaacacgtccgtcaactctcttctcggtcatgtgctataacgtgctgtgtgataaa
tacgccacgaggcagctctatggctactgcccgacctgggctctaaactgggagtacagg
aagaagtccatcatgcaggaaatcctcggctgcaacgcagacatcatcagtttgcaggaa
gtagaaacagagcagtactacagtttcttcctgcctgagttgaaagaacaaggatatgat
gggttcttcagtccaaagtcacgagccagaaccatgtcagagtccgatcgtaaacacgtg
gatggctgtgcgattttcttcaagacagaaaagttcggcgccgtgcagaggcacaccgtg
gagttcaaccagctggccatggctaactccgagggctctgaggccatgttgaacagggtg
atgacgaaggacaacatcggggtcgctgtgctgcttgaggtccgcaaagaaatcatggag
atctcctctgggaagtcactccacggcatggagaagcagcttcttctggtagcaaatgcc
cacatgcactgggacccagagtactcagatgtcaagctggtccagaccatgatgtttctg
tcagaggtgaagaatatcgtagacaaggccacgcgcagcttcaagttatcctcctctggt
gagaccaatgccattccactggtgctgtgtgctgacctcaactccctgcctgactctggc
gtagtggagtacctgagtaccggtggagtggactgcacccacaaggacttcaaggagctc
cgctacagtgacagcctgaccaaattcaactgcaacggcaagaatagcacatccaacggc
aagatcactcacggcttcaagttgaagagcgcctacgagaatggcctgatgccttacacc
aattacaccttcgacttcaagggtgtgatcgattacgttttctactccaagcctcacctg
aacgtcctgggcatcctgggccctctggacccccactggcttgtagagaacaatgtcagc
ggctgcccacacccccacatcccctctgaccacttctccctctttgctcagctggaattg
ctcctgcccgctttgcccccgcaggtcaacgggcttcacctgcctgcacgcaggtag
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