Novosphingobium ginsenosidimutans: FRF71_09670
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Entry
FRF71_09670 CDS
T06189
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
ngf
Novosphingobium ginsenosidimutans
Brite
KEGG Orthology (KO) [BR:
ngf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ngf03032
]
FRF71_09670
03400 DNA repair and recombination proteins [BR:
ngf03400
]
FRF71_09670
Enzymes [BR:
ngf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
FRF71_09670
DNA replication proteins [BR:
ngf03032
]
Prokaryotic type
DNA Topoisomerases
FRF71_09670
DNA repair and recombination proteins [BR:
ngf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
FRF71_09670
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Motif
Other DBs
NCBI-ProteinID:
QEA16377
UniProt:
A0A5B8S6T7
LinkDB
All DBs
Position
complement(1941800..1942831)
Genome browser
AA seq
343 aa
AA seq
DB search
MAAKNRNPAPNPKRLPRSEADLVFVEVTALTVGRRRVGQRWRYLDETGARITDPAEIERL
NRIALPPAYTEARFCPDPQGHLQAVGIDARGRRQYRYHPAFREARDTRKFANCAAFGAAL
PKLRQRLDKDLQAPPRSRAAVLAAVVRILDCEYLRIGNPAYARENKSFGLTTLRNRHAKL
TRGGLALDYRGKSGIMRRVRLTDQRVIRVVRRCQDLPGQQLFQYQGDDGQVHAISSADVN
VYLRTITGSDFTAKDFRTWHGSVIAFAALNRGVRLKEMLQEVSQALANTPAVARKAYIHP
ALVEAARSGRFTPQRLPRAGRLSRAERGFLEWLATEPAKFLAG
NT seq
1032 nt
NT seq
+upstream
nt +downstream
nt
atggcggcaaaaaatcgcaacccagccccgaacccgaagcgccttccccggtctgaagcc
gatctggtttttgtggaagttaccgcgctaacggttggccggcggcgggtcgggcagcgc
tggcgctatctcgatgagacaggcgcacggattacggacccggccgaaatcgagcgcctg
aaccgcatcgccctgcccccggcctataccgaggcccgcttttgccccgatccgcagggc
caccttcaggcggtcggcatcgatgcacggggccgccggcaatatcgttatcacccggca
tttcgggaagcgcgcgatacccgcaagtttgccaactgcgccgcttttggtgcagccctg
ccaaagctgcgccagcggctcgacaaggacctacaggccccgccgcgcagccgcgcggct
gtgctggcggcggtggtgcggatcctcgattgcgaatacctgcggatcggcaaccccgcc
tacgcgcgcgaaaataagtcgtttggtctcactaccctgcgcaaccgccatgccaagctg
acccgtggcggcctggcgctggactatcgcggcaagagcggaatcatgcgccgggtgcgg
ctgaccgatcagcgggtgatccgcgtggtccggcgctgccaggacctgcccgggcaacag
ctgttccagtaccagggcgatgacggccaggtccacgcaataagctcggccgacgtgaac
gtctatctgcgcacgatcaccggcagtgactttaccgcgaaggatttccgcacctggcac
ggcagtgtcatcgcctttgccgcgctcaatcggggtgtacggctgaaagagatgctgcag
gaagtatcccaggcgctggccaatacgccggcggtcgcgcgcaaggcctatatccatcca
gcgctggtcgaggcggcccggtcgggccgcttcacgccgcagcgcttgccccgcgcgggt
cgcttgagccgggccgagcggggtttcctggaatggctggcgacggaaccggccaagttc
cttgccggttag
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