Nitrobacter hamburgensis: Nham_0048
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Entry
Nham_0048 CDS
T00348
Name
(GenBank) DNA-(apurinic or apyrimidinic site) lyase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
nha
Nitrobacter hamburgensis
Pathway
nha03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
nha00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Nham_0048
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nha03400
]
Nham_0048
Enzymes [BR:
nha01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
Nham_0048
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
Nham_0048
DNA repair and recombination proteins [BR:
nha03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Nham_0048
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
ABE60949
UniProt:
Q1QS48
LinkDB
All DBs
Position
complement(53229..54110)
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AA seq
293 aa
AA seq
DB search
MPELPEVETVRRGLQPAMEGATIVRAETRRKDLRFPFQTDFVARLEGQTVTGLGRRAKYL
LADLASGDVLLMHLGMSGSFRVIDAAGATAPGDCHHPRNEDRAHDHVSFTMSSGASVIFN
DPRRFGYMKVIARTVLNDEPLLKGLGPEPLGNEFDAAMLARACRDKKTSLKAALLDQRVV
AGLGNIYVCEALFRAHLSPRRLAATLASKTGGPADRAGRLVEAIHDVLNQAIKAGGSSLR
DHRQTTGELGYFQHSFRVYDREGEKCRTPTCRGTVKRFTQNGRSTFWCPVCQK
NT seq
882 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaactccccgaagtcgaaaccgttcgtcgcggcttgcagcctgccatggagggc
gcgaccatcgttcgcgctgagacccgtcgcaaggacctgcggtttccgttccagaccgat
tttgtcgcccgcctggagggccagaccgtgaccgggctcgggcggcgggccaaatacctg
ttggcggacctcgcctccggcgacgtgctgttgatgcatctcggcatgtccggctcgttc
cgcgtgattgatgcggccggtgccacggctccgggcgattgtcaccatccgcgcaacgag
gaccgcgcccacgaccatgtgagttttacgatgtcgtcgggcgccagcgtgatcttcaac
gatccgcgccggttcggctacatgaaggtcatcgcccgcacggtgctcaacgacgagccg
ctgctgaaagggctcggcccggagccgctcggcaacgaattcgacgcggcgatgctggcg
cgcgcgtgccgcgacaaaaagaccagcctcaaggccgcgctgctcgaccagcgcgtggtc
gcggggctgggcaacatctatgtgtgcgaggcgctgtttcgcgcacacctgtcgccgcgt
cgtctcgccgcgacgctggcttcgaaaacgggggggccggccgatcgtgccggacggttg
gtcgaggccattcacgacgtgctcaatcaggcgatcaaggccggcggatcgtcgctgcgc
gatcatcgccagaccacgggcgaactgggttacttccagcattcgtttcgggtctacgac
cgcgagggcgaaaaatgccggacgccgacatgcaggggcacggtaaagcgttttacgcag
aacggacgttcgacgttctggtgtccggtttgtcagaagtag
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