Nibribacter ruber: GU926_03400
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Entry
GU926_03400 CDS
T06388
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
nib
Nibribacter ruber
Pathway
nib03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nib00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GU926_03400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nib03019
]
GU926_03400
Enzymes [BR:
nib01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GU926_03400
Messenger RNA biogenesis [BR:
nib03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GU926_03400
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UTP25
P-loop_SecA
AAA_22
CMS1
Acetyltransf_17
Motif
Other DBs
NCBI-ProteinID:
QHL86537
UniProt:
A0A6P1NS84
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All DBs
Position
complement(790239..791387)
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AA seq
382 aa
AA seq
DB search
MSFTQLGLSPALQKAAQAQQFTQATPVQEQAIPAILKGKDLLGIAKTGSGKTAAYALPIL
DMLQTNRAFRNRFVKALVLVPTRELALQVGEVFLGLSAHMAIKVKTLAVFGGVSINPQMM
KLQGTDILVATPGRLLDLVESGAVHLSDVEMLVLDEADKMLNQGFEEEMRQILKLLPKKR
QNLLFSATLDNKVNAIQETLLVNPVVVEVKEDEKPEEELEIKELAYLIATERKGPFLRYL
IKHHQMQQVLVFVSATQRADHLVTKLANNGIKAVALHSGKSQGARTEALSLFKKGKVPVL
VATDIAARGIDVPVLPFVINYDLPRSSKDYVHRIGRTGRAGATGEALTLVTPEDAHHFKI
IQKQTKRIIPTQDTEEIDLKGF
NT seq
1149 nt
NT seq
+upstream
nt +downstream
nt
atgtcattcacccaactgggcttatcacccgccttgcagaaagccgcccaggcgcaacag
ttcacccaagccacgccggtgcaggagcaggccattccggccattttgaaagggaaggat
ttgttgggcatcgcgaaaaccggttctgggaagacggcggcctatgccttgcccatcctg
gatatgctgcaaactaaccgggctttccggaaccggtttgtgaaagcattggtgctggtg
cccacgcgcgagctggccttgcaggtaggagaggtgtttctggggctgagtgcgcacatg
gccattaaagtgaagacgctggccgtgtttggcggcgtgtccattaatccgcagatgatg
aaactgcagggcaccgacattctggtggctacgcccggcagactgctggacctggtagaa
tctggggcggtgcatttaagcgacgtagaaatgctggtgctggacgaagccgacaaaatg
ctgaaccagggctttgaggaagagatgcgccagattttgaaactgctgcctaaaaaacga
cagaacctgttattttcggccaccttggataacaaggtgaatgccattcaggagacgctt
ttggtaaacccggtggtggtagaagtgaaggaagatgaaaagcctgaggaagaactggaa
atcaaggaactggcatatttaatagccacagagcggaaaggtccattcttacgctacctt
atcaagcaccaccaaatgcagcaggtgctggtgtttgtgtctgccacgcagcgcgcagac
catttagtaaccaaactggccaacaacggcattaaggcggtagctttgcacagcgggaag
agccagggcgcccgtacagaggcgctgtctttgtttaaaaaaggaaaggtacccgtattg
gtagccactgacattgccgcccgcggaattgacgttcccgtgttgccatttgtgattaac
tatgatttgcccaggtcgtctaaggattacgtgcaccgcataggccgcaccggtagagcc
ggggcaacgggcgaggcgcttaccttggtcaccccagaagacgcccatcatttcaaaatc
atccagaagcaaaccaagaggattatcccaacgcaagacaccgaagagattgatctgaaa
ggcttttag
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