Nitrospira sp. KM1: W02_31860
Help
Entry
W02_31860 CDS
T08344
Symbol
ykoU
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
nif
Nitrospira sp. KM1
Brite
KEGG Orthology (KO) [BR:
nif00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
W02_31860 (ykoU)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nif03400
]
W02_31860 (ykoU)
Enzymes [BR:
nif01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
W02_31860 (ykoU)
DNA repair and recombination proteins [BR:
nif03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
W02_31860 (ykoU)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
DHDPS
Motif
Other DBs
NCBI-ProteinID:
BCA56046
UniProt:
A0A679HYN8
LinkDB
All DBs
Position
complement(3324328..3326934)
Genome browser
AA seq
868 aa
AA seq
DB search
MSLKRYHQKRRFRRTPEPKGRKAASAQGHLYVIQKHAASRLHYDFRLELDGVLKSWAVPK
GPSLDPAVKRLAMHVEDHPVEYGSFEGIIPKGEYGGGTVMLWDKGTWQPVGDPSASYRAG
KLKFVLDGERLKGGWMLARMKARKTEHGDPWLLIKETDGYSSRSEDSDDEGSESVVSGRT
MEEIASQRNAVWSSHRKKELRAPSPLKRIGSAASRQLFASAPGARKTALPKAFRPQLATL
VDRPPAGDGWLHEIKLDGYRLLAFIRNGRATLMTRNGLDWTAKFPTLVEALAGLPVQEGM
LDGEVVVIRADGTTDFQALQGMLQNKSAVPLHYYIFDVPYGEGYDLTQVPLLERKEILNQ
LLSPHVDTHSVIRYSDHVLGHGEDFHNHACSLKAEGMISKDVSSHYSQRRSPQWLKIKCT
QQQEFVIGGYTDPGGARTGFGALLIGVYEGGRHLRYTGRVGTGFSQELLGNVMKQLRARE
TSTMPFKDFPKDISRRGVHWVNPELVAEIRFTEWTSDNVLRHPAFLGLRADKSPHEVIRE
APKPMSEAAAASPPKGRSRRKEPAAALPSPFKLTNSERILYPEQGITKLMLAQYYQTMAS
WILPHIVRRPLTIVRCPHGYDKQCFYQKHVMEGLPPSIRGVRVKEKHGSMTTLVIDDLDG
LTGLVQLGVLEIHPWGCTEDSLNKPDRLVFDLDPAPDVPLNHLIEAAQLVRDLLEAIELT
SFVKTTGGKGLHVVVPLTPRVSWDELKQFAKQIAGSLASHDPKRYIDVMAKSRRAGKIFV
DYLRNGYGATSVAAYSTRARAGATVSAPLRWKELAPKLDFTSFNLNTVPSRLAGGKSDPW
EGFATTRQSLTPAMIRQVATLNAKLLRG
NT seq
2607 nt
NT seq
+upstream
nt +downstream
nt
gtgagcctcaagcgttatcaccaaaaacgacgtttcaggcggacgccagagccgaagggc
aggaaggccgcatcggcacaagggcatctgtacgtcatacaaaagcatgccgccagccga
ttgcattacgatttccgccttgaattggacggcgtattgaaaagctgggcggttcccaaa
ggaccgagccttgaccccgccgtcaaacgccttgccatgcatgtcgaagatcacccggtc
gaatatggatcattcgaaggcatcatcccgaagggtgagtacggcgggggcaccgtcatg
ctatgggacaagggcacctggcaaccggtgggagatccttcggcatcgtacagagccgga
aaactcaagttcgtgctcgacggagagcgactcaaaggcgggtggatgctcgctcggatg
aaagcacggaagactgaacacggcgatccatggctgttgatcaaggaaaccgacgggtac
tccagccgatccgaggactcggatgacgagggaagcgaaagcgtcgtgtccggacggacg
atggaggaaatcgcctctcaacgcaacgcggtctggtcgtcacaccgaaagaaagaactc
cgagccccttcgccactgaaacgtatcggaagcgccgcgtctcggcaactgtttgcatcc
gcccccggcgcccgtaagaccgcactgccgaaggcgttccgtcctcagctggcgactctg
gtcgatcggccgccggccggcgacggctggctgcatgaaatcaaactggacggctaccgg
ctgctggcgttcattcgaaacggccgcgccacgctcatgacccgcaacggcctggactgg
acggccaaattccccaccctcgtcgaagcgttggccggcctgccggtccaggaaggcatg
ctcgatggagaagtcgtcgtgatccgggccgacggcacgaccgactttcaagctctgcaa
ggcatgctgcagaacaagtctgccgttcctctccattattatattttcgatgtgccgtac
ggtgaaggatatgacctgactcaggtgcctctgctcgagcgcaaagagatactgaatcaa
ctgttgtcccctcacgtcgacacgcactccgtgatccggtactcggatcatgtgctggga
cacggcgaggactttcacaatcacgcgtgcagcctcaaagccgaagggatgatctcgaag
gacgtatccagccattacagccaacgccgctctccgcaatggttgaaaatcaaatgcacc
cagcagcaggaattcgtgatcggcgggtacacggaccccggcggcgcgcgcacgggcttc
ggagccctgctgatcggcgtgtatgaaggcggccggcaccttcggtataccggtcgcgtg
gggacgggattttctcaggaattattgggcaatgtgatgaagcaacttcgcgcgcgtgaa
acctcgaccatgccgttcaaggattttccaaaggatatctcccgccgcggcgtgcattgg
gtaaaccccgaattggtggccgaaatccgttttacggagtggacctctgataatgtcttg
cggcatccggcctttctcggccttcgggcggacaagtccccgcacgaggtcatccgtgaa
gcgcccaagccgatgtccgaggcagccgcagcatctcccccaaaaggccgttcgaggagg
aaggaaccggcggccgctttaccctcccccttcaaattgaccaattcagaacgcatcctc
tatccggagcaaggaatcacgaaactcatgctggcgcagtattatcagaccatggcatcg
tggatcctgccgcatatcgtgcgccggccattaacgatcgtgcgatgtcctcacggatat
gacaaacaatgtttctatcagaaacatgtcatggaaggtcttccgccttcgatcagaggc
gttcgtgtcaaagaaaagcacggatccatgacgaccctggtgatcgatgatctcgatggc
ttgaccggcctggtgcaattgggcgtgctggaaatccatccctgggggtgtacagaagac
tcgttgaataagccggaccgcctcgtgttcgacctggatcccgcccccgacgtgcctctg
aatcatctgattgaggcggcgcaattggtcagggatctcttggaggccatcgagctaaca
agtttcgtgaagacgaccggcggcaagggattgcacgtggtcgtccccctcacaccccgc
gtctcctgggatgaactcaagcagtttgcgaagcagattgcgggatcattggcctcgcac
gatcccaagcggtacatcgacgtcatggcgaaatccagaagagccgggaagatatttgtc
gattacctgcgcaacggatatggggccaccagcgtggcagcctattcgacgagggcgaga
gccggcgcaacggtatcggctccgctgcggtggaaagagttggcgccaaaactggatttc
acgtcattcaatttgaatacggttcccagccggctggccggcgggaagtcggacccctgg
gaaggattcgcgacgacccgccagtccctcacaccggcaatgatccgccaggtcgccaca
ctcaatgcgaaactgctgcgcggctag
DBGET
integrated database retrieval system