KEGG   Nitrospira sp. KM1: W02_31860
Entry
W02_31860         CDS       T08344                                 
Symbol
ykoU
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
nif  Nitrospira sp. KM1
Brite
KEGG Orthology (KO) [BR:nif00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    W02_31860 (ykoU)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:nif03400]
    W02_31860 (ykoU)
Enzymes [BR:nif01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     W02_31860 (ykoU)
DNA repair and recombination proteins [BR:nif03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     W02_31860 (ykoU)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S RNA_ligase DHDPS
Other DBs
NCBI-ProteinID: BCA56046
UniProt: A0A679HYN8
LinkDB
Position
complement(3324328..3326934)
AA seq 868 aa
MSLKRYHQKRRFRRTPEPKGRKAASAQGHLYVIQKHAASRLHYDFRLELDGVLKSWAVPK
GPSLDPAVKRLAMHVEDHPVEYGSFEGIIPKGEYGGGTVMLWDKGTWQPVGDPSASYRAG
KLKFVLDGERLKGGWMLARMKARKTEHGDPWLLIKETDGYSSRSEDSDDEGSESVVSGRT
MEEIASQRNAVWSSHRKKELRAPSPLKRIGSAASRQLFASAPGARKTALPKAFRPQLATL
VDRPPAGDGWLHEIKLDGYRLLAFIRNGRATLMTRNGLDWTAKFPTLVEALAGLPVQEGM
LDGEVVVIRADGTTDFQALQGMLQNKSAVPLHYYIFDVPYGEGYDLTQVPLLERKEILNQ
LLSPHVDTHSVIRYSDHVLGHGEDFHNHACSLKAEGMISKDVSSHYSQRRSPQWLKIKCT
QQQEFVIGGYTDPGGARTGFGALLIGVYEGGRHLRYTGRVGTGFSQELLGNVMKQLRARE
TSTMPFKDFPKDISRRGVHWVNPELVAEIRFTEWTSDNVLRHPAFLGLRADKSPHEVIRE
APKPMSEAAAASPPKGRSRRKEPAAALPSPFKLTNSERILYPEQGITKLMLAQYYQTMAS
WILPHIVRRPLTIVRCPHGYDKQCFYQKHVMEGLPPSIRGVRVKEKHGSMTTLVIDDLDG
LTGLVQLGVLEIHPWGCTEDSLNKPDRLVFDLDPAPDVPLNHLIEAAQLVRDLLEAIELT
SFVKTTGGKGLHVVVPLTPRVSWDELKQFAKQIAGSLASHDPKRYIDVMAKSRRAGKIFV
DYLRNGYGATSVAAYSTRARAGATVSAPLRWKELAPKLDFTSFNLNTVPSRLAGGKSDPW
EGFATTRQSLTPAMIRQVATLNAKLLRG
NT seq 2607 nt   +upstreamnt  +downstreamnt
gtgagcctcaagcgttatcaccaaaaacgacgtttcaggcggacgccagagccgaagggc
aggaaggccgcatcggcacaagggcatctgtacgtcatacaaaagcatgccgccagccga
ttgcattacgatttccgccttgaattggacggcgtattgaaaagctgggcggttcccaaa
ggaccgagccttgaccccgccgtcaaacgccttgccatgcatgtcgaagatcacccggtc
gaatatggatcattcgaaggcatcatcccgaagggtgagtacggcgggggcaccgtcatg
ctatgggacaagggcacctggcaaccggtgggagatccttcggcatcgtacagagccgga
aaactcaagttcgtgctcgacggagagcgactcaaaggcgggtggatgctcgctcggatg
aaagcacggaagactgaacacggcgatccatggctgttgatcaaggaaaccgacgggtac
tccagccgatccgaggactcggatgacgagggaagcgaaagcgtcgtgtccggacggacg
atggaggaaatcgcctctcaacgcaacgcggtctggtcgtcacaccgaaagaaagaactc
cgagccccttcgccactgaaacgtatcggaagcgccgcgtctcggcaactgtttgcatcc
gcccccggcgcccgtaagaccgcactgccgaaggcgttccgtcctcagctggcgactctg
gtcgatcggccgccggccggcgacggctggctgcatgaaatcaaactggacggctaccgg
ctgctggcgttcattcgaaacggccgcgccacgctcatgacccgcaacggcctggactgg
acggccaaattccccaccctcgtcgaagcgttggccggcctgccggtccaggaaggcatg
ctcgatggagaagtcgtcgtgatccgggccgacggcacgaccgactttcaagctctgcaa
ggcatgctgcagaacaagtctgccgttcctctccattattatattttcgatgtgccgtac
ggtgaaggatatgacctgactcaggtgcctctgctcgagcgcaaagagatactgaatcaa
ctgttgtcccctcacgtcgacacgcactccgtgatccggtactcggatcatgtgctggga
cacggcgaggactttcacaatcacgcgtgcagcctcaaagccgaagggatgatctcgaag
gacgtatccagccattacagccaacgccgctctccgcaatggttgaaaatcaaatgcacc
cagcagcaggaattcgtgatcggcgggtacacggaccccggcggcgcgcgcacgggcttc
ggagccctgctgatcggcgtgtatgaaggcggccggcaccttcggtataccggtcgcgtg
gggacgggattttctcaggaattattgggcaatgtgatgaagcaacttcgcgcgcgtgaa
acctcgaccatgccgttcaaggattttccaaaggatatctcccgccgcggcgtgcattgg
gtaaaccccgaattggtggccgaaatccgttttacggagtggacctctgataatgtcttg
cggcatccggcctttctcggccttcgggcggacaagtccccgcacgaggtcatccgtgaa
gcgcccaagccgatgtccgaggcagccgcagcatctcccccaaaaggccgttcgaggagg
aaggaaccggcggccgctttaccctcccccttcaaattgaccaattcagaacgcatcctc
tatccggagcaaggaatcacgaaactcatgctggcgcagtattatcagaccatggcatcg
tggatcctgccgcatatcgtgcgccggccattaacgatcgtgcgatgtcctcacggatat
gacaaacaatgtttctatcagaaacatgtcatggaaggtcttccgccttcgatcagaggc
gttcgtgtcaaagaaaagcacggatccatgacgaccctggtgatcgatgatctcgatggc
ttgaccggcctggtgcaattgggcgtgctggaaatccatccctgggggtgtacagaagac
tcgttgaataagccggaccgcctcgtgttcgacctggatcccgcccccgacgtgcctctg
aatcatctgattgaggcggcgcaattggtcagggatctcttggaggccatcgagctaaca
agtttcgtgaagacgaccggcggcaagggattgcacgtggtcgtccccctcacaccccgc
gtctcctgggatgaactcaagcagtttgcgaagcagattgcgggatcattggcctcgcac
gatcccaagcggtacatcgacgtcatggcgaaatccagaagagccgggaagatatttgtc
gattacctgcgcaacggatatggggccaccagcgtggcagcctattcgacgagggcgaga
gccggcgcaacggtatcggctccgctgcggtggaaagagttggcgccaaaactggatttc
acgtcattcaatttgaatacggttcccagccggctggccggcgggaagtcggacccctgg
gaaggattcgcgacgacccgccagtccctcacaccggcaatgatccgccaggtcgccaca
ctcaatgcgaaactgctgcgcggctag

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