Nitrospira japonica: NSJP_0095
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Entry
NSJP_0095 CDS
T05001
Symbol
recJ
Name
(GenBank) Single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
nja
Nitrospira japonica
Pathway
nja03410
Base excision repair
nja03430
Mismatch repair
nja03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
nja00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
NSJP_0095 (recJ)
03430 Mismatch repair
NSJP_0095 (recJ)
03440 Homologous recombination
NSJP_0095 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nja03400
]
NSJP_0095 (recJ)
DNA repair and recombination proteins [BR:
nja03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
NSJP_0095 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
NSJP_0095 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NSJP_0095 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
DUF1702
Motif
Other DBs
NCBI-ProteinID:
SLM46267
UniProt:
A0A1W1HZX4
LinkDB
All DBs
Position
I:complement(89050..90753)
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AA seq
567 aa
AA seq
DB search
MKSKLWVFRDIDPTHREFLVQALSISAATASLLVARGVTTPDEAISWMSHQLSHDPYLIP
DMEQAVERLRRAVIDNESICFYGDYDVDGMTATSVYLSFFAGLGARVRAYVPHRLREGYG
LNAGAVRQLRAEGTSLLVTSDCGTTAHRELALAMELGLDVIVTDHHQTDERMPPAVAVMN
PHRTDARYPFRGLCSAALAYKVVEAYQSRYGDGGMPLESLLDLVALGTIADVVPLQDENK
GFVRAGLVQLSRGARCGIRALKQVAGVTKECTAETVAFRLAPRLNAAGRLDHALLGVQLL
TTDSPSEASRLADRLEQLNRERQAIEAEVLSEAIAMVKLLEPELPGALVLASRRWHVGVV
GIVAARLVDRYHRPAVVIAIDDHGVGKGSARTVGNFDLYESLSVCRDLLDAFGGHPSAAG
VTVRETQLAEFGDRFAAIAGAWTNSRPGEPTLHVDAELRLTDVTTRLIQEIHAFHPFGAG
NPEPTFAVKGLEIMEARTVGERHLKMTVRQGRSLPFDSIGFGMRSLEDRGIPSRSPVDLA
FLPEMNRWNGYDRIQLRIRDLRPSVRE
NT seq
1704 nt
NT seq
+upstream
nt +downstream
nt
atgaagtccaagctttgggtcttccgcgacatcgatcccacgcaccgcgaattcctggta
caggccttgtcgatttcggctgcaacggcttccttgctcgtcgcgaggggagtgacgacg
cctgacgaagccatatcctggatgtcccatcagctttctcacgatccgtatctcattcct
gatatggagcaggcggtcgaacgcctgcggcgggcggtgatcgacaacgaatcgatctgt
ttttacggggattacgatgtggacggcatgaccgccaccagcgtgtatctttcgttcttc
gccggactgggggctcgggtgcgcgcctatgtgccgcatcgcctgcgcgagggatacggg
ctcaatgcgggcgcggtacggcagttgcgggccgaagggacctcgctgctggtcacgtcc
gattgtggcaccaccgctcaccgtgagttggcattggccatggaactcgggttggacgtc
atcgtgactgatcatcatcagacggacgagcggatgccgccggccgtggcggtcatgaat
ccccaccggacggacgcccggtatccgtttcgcggactctgctcggccgccctggcctat
aaagtggtcgaagcctatcagtctcgctatggggacggcgggatgccgctggaatcgtta
ttggatttggtcgccctgggtacgattgcggacgtcgtaccgctccaggacgaaaacaag
ggatttgtgagggcgggattggtccagctctcgcgcggcgctcgctgcggtatccgtgcg
ctgaagcaggttgccggcgtgacgaaggagtgtaccgcggaaaccgtagcgttcaggttg
gctccaagacttaatgcagccggccgattggatcatgcattgctcggggtgcagctctta
acgaccgactcgccgtcggaagcgagccggctcgccgatcggcttgagcaactcaaccgg
gaacggcaagcgattgaggccgaggtactctctgaagccatcgccatggtcaaactgttg
gaaccggagttgccgggtgcactggtgctcgcctcacgacgttggcatgtgggggtggtg
ggcatcgtcgcagcgaggttggtcgaccgctaccaccgccccgccgtggtgatcgccatc
gacgaccatggagtggggaagggatccgcgcggacggtcgggaatttcgatctctatgag
tcgttatccgtatgccgagatcttctcgacgcattcggcggacatcccagcgcggcaggc
gtcacggtgcgcgaaactcaattagccgaattcggagaccggtttgcggcgattgcaggg
gcatggacgaacagccgtcccggcgagccaacgctgcacgtggacgcggaattgcggctg
accgacgtcacgacccgattgattcaagaaatccatgcgttccatccgttcggcgccggc
aatcccgagccgaccttcgcggtgaaggggctcgagatcatggaggctcgcaccgtggga
gaacggcacctgaaaatgacggtgcgtcaaggccgctccctgccgtttgatagcatcggg
ttcgggatgcgatcattggaagatcggggaatcccgtcccgttccccggtcgacttggcc
tttctgcctgaaatgaaccggtggaacggctacgatcggatccagctccgaattcgcgac
ctgcgcccaagcgttcgggagtag
DBGET
integrated database retrieval system
