Nitrospira japonica: NSJP_4094
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Entry
NSJP_4094 CDS
T05001
Symbol
holB
Name
(GenBank) DNA polymerase III, delta' subunit
KO
K02341
DNA polymerase III subunit delta' [EC:
2.7.7.7
]
Organism
nja
Nitrospira japonica
Pathway
nja03030
DNA replication
nja03430
Mismatch repair
nja03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
nja00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NSJP_4094 (holB)
03430 Mismatch repair
NSJP_4094 (holB)
03440 Homologous recombination
NSJP_4094 (holB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nja03032
]
NSJP_4094 (holB)
03400 DNA repair and recombination proteins [BR:
nja03400
]
NSJP_4094 (holB)
Enzymes [BR:
nja01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
NSJP_4094 (holB)
DNA replication proteins [BR:
nja03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
NSJP_4094 (holB)
DNA repair and recombination proteins [BR:
nja03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
NSJP_4094 (holB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
DNApol3-delta_C
AAA
Mg_chelatase
Motif
Other DBs
NCBI-ProteinID:
SLM50261
UniProt:
A0A1W1IBH2
LinkDB
All DBs
Position
I:3996498..3997526
Genome browser
AA seq
342 aa
AA seq
DB search
MPFDEVIGHEATIAALQTAASGGRLAHAYLFHGDVAIGKRLTASRFAQALNCERMETAKP
PDACGLCRSCLQIEARTYPDFFVIEPDRELAVPQIKIEEIRNLEQQMVYRPLVGERKICL
IDDADRMTIGASNALLKTLEEPPDHSLFLLVSSRPHALPATIRSRCQQLRFGVPSWTRVE
AALIRDREKNPADARLLAVFSEGRIGQAFSADAGQLRTRQREILELVNQQTLQSSALLLT
AAESLHKSERAQDTLTWLARWIRDVVFVRVGGDPDQLLFAEHIRALEACARQADTDSLLQ
LLQDIEQTEQQSGRHVNLQIALENILLRLRDAIFPQTPVPSS
NT seq
1029 nt
NT seq
+upstream
nt +downstream
nt
atgccgtttgatgaggtcatcgggcacgaggcgacgatcgccgccctgcaaaccgccgca
agcggcgggcgactggcccatgcctatctgtttcacggagacgtcgccatcggaaaacgg
ctgacggcgtctcgattcgcccaagctctcaattgcgaacggatggagacggcgaagccg
cccgacgcatgcggcctctgtcgttcgtgcctgcagatcgaggcccgcacctacccggat
ttcttcgtgatcgagccggaccgggaattggccgtaccccagatcaagatcgaagaaatt
cgcaacctcgagcagcagatggtgtaccgtccgttggtcggcgagcgaaagatttgtctc
atcgacgacgcggaccgcatgaccatcggcgcatccaacgcccttttgaaaaccctggag
gaaccgccggaccacagtctgtttctgctggtctcaagccggccccacgccttgccggcg
acgatccgttcacgatgccagcaactccggttcggcgttccgtcatggacacgggtggaa
gcggcgctcattcgcgatcgggagaagaaccccgcggacgctcgcttgctggccgtcttc
agcgaggggcgtatcgggcaggcgttctcagccgatgcgggacaactccgtacccgacag
cgcgaaatcctggaactggtcaaccagcagaccctgcaatcgagcgcgttattgctcacc
gctgccgaatcactccacaaatccgaacgtgcgcaagacaccctgacgtggctggcccgg
tggatcagagacgtcgtattcgtccgagtgggaggggatcctgaccaactcctgttcgcc
gagcacattcgggcgctcgaagcctgtgcacgccaggcggatacggattctcttctccag
ctgcttcaggatattgagcagacggagcaacagtccggccggcacgtcaatctccaaatc
gccctcgagaacatcctcctccgcctgcgtgacgcgatcttcccgcagactcccgtcccg
tcatcctga
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