Niastella koreensis: Niako_1251
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Entry
Niako_1251 CDS
T01679
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
nko
Niastella koreensis
Pathway
nko03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nko00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Niako_1251
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nko03019
]
Niako_1251
Enzymes [BR:
nko01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Niako_1251
Messenger RNA biogenesis [BR:
nko03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Niako_1251
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
ERCC3_RAD25_C
CMS1
P-loop_SecA
FCP1_C
Motif
Other DBs
NCBI-ProteinID:
AEV97624
UniProt:
G8TKG8
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All DBs
Position
1533575..1534717
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AA seq
380 aa
AA seq
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MAFSALGLSAPLLKAIGEQSFTQPTPVQKQAIPAILQGKDILGISKTGSGKTAGYVLPIL
ELCQRRVEKKDRHVRVLVIVPTRELAIQVSDVCKTFCAHLPNKIKTMAVYGGVSINPQMM
ALHGIEILIATPGRLLDLIDHKAVHLSQVEILVLDEADKMLNLGFKEEMDKVFQLLPAKR
QNLLFSATASEDIKDMQRHLLHLPLTIEVVEEEHSIELIEQLAYHVTEARKGPLLRYLIK
NEGMQQVLVFTSAVRTADNLTGKLIKNGIQAASLHGHLSQTGRLKTLQRFKEGKLRVLVA
SDLASRGIDIEQLPIVINYELPRSPKDYIHRIGRTGRAGASGRAVSLICPKDQHHFGIIQ
KKMGKKVEILESDDINLQGF
NT seq
1143 nt
NT seq
+upstream
nt +downstream
nt
atggcattttccgctttgggtttatctgccccgttattaaaggcaataggcgaacagtca
tttacacagcctacgcctgtgcagaagcaggctattcctgcgatcttacagggaaaggat
atactcggcatatctaaaaccggctctggcaaaactgccggttatgtattgcctatactg
gaattgtgccagcgccgggtagaaaagaaagacaggcacgtgagggtattggtaatagtg
cccacccgtgagctggctatacaggtaagtgatgtttgtaagaccttctgcgcccacctg
ccgaataaaataaaaacaatggcggtgtatggtggtgtttccatcaacccgcaaatgatg
gccttgcatggcatcgaaatattaatagctacaccgggccgtttgcttgatctgatagac
cataaagccgtgcacttatcacaagtagaaatactggtgctggatgaagccgataaaatg
ctgaacctgggttttaaagaggagatggataaagtgtttcagctgctaccggccaaacgc
cagaacctgttgttttctgccactgccagtgaagatattaaagatatgcagcgtcacctg
ctgcacctgccgctaacgattgaagtggtagaagaagagcacagcattgaattgattgaa
caacttgcctatcatgtaaccgaagctcgtaaagggccgcttttacgttacctgatcaag
aatgaaggtatgcagcaggtgctggtgtttacctctgccgtaagaacggcagataacctt
accggcaaacttatcaaaaatgggatacaggcagcttctttgcacggccacttgagccag
actggccgtcttaaaacgttgcaacgttttaaagagggtaagttgcgggtactggtagca
tctgatcttgcctcgcggggtattgatattgagcaattgccaatagtcattaactacgag
ttgccacgttctcccaaagattatatacaccgcatcggccgtaccggcagggcaggcgct
tcgggcagggctgtttcgctgatctgtcctaaagaccagcatcattttggcatcatccag
aaaaagatggggaaaaaagtagagatcctggaaagtgacgatattaatctgcagggtttt
taa
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