Numida meleagris (helmeted guineafowl): 110399311
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Entry
110399311 CDS
T06015
Symbol
COL13A1
Name
(RefSeq) collagen alpha-1(XIII) chain isoform X1
KO
K16617
collagen type XIII alpha
Organism
nmel
Numida meleagris (helmeted guineafowl)
Brite
KEGG Orthology (KO) [BR:
nmel00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
nmel00536
]
110399311 (COL13A1)
Glycosaminoglycan binding proteins [BR:
nmel00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
110399311 (COL13A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
110399311
NCBI-ProteinID:
XP_021253437
LinkDB
All DBs
Position
5:31935634..32013780
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AA seq
772 aa
AA seq
DB search
MLEEKSWKGVSEAAFDRGCVAPPRTGDGERCCRLPLLLGSGLPGISLLSLVLSLLLYFRT
SDLQSRVSHLEADRSTQLPAWLSADQMETAILGRVDQLLDEKLKFHLPRHREVRETHQRC
NCPAGPPGTTGRPGLPGDKGAMGIPGRPGLKGQPGEKGAPGEAGMSIIGPRGPPGQPGTR
GFPGFPGPIGLDGKPGHPGQKGEMGAAGPRGQPGPPGQKGEKGQCAEYSHREYLSTTLAA
LRSNQILTLKGEQGQAGIQGPPGPPGPPGPTGPAGPEGTPGQPGPIGPPGRAGEPGKPGR
DGKGLPGPPGPKGDPGIQGYPGRKGERGMPGLPGRHGMKGAPGMATAGMKGEPGTPGEKG
EPGVPGRMGPPGLPGKRGQRGEKGRAGDPGLPGPKGEKGNGENALVGGKGEPGPPGLPGP
PGPKGEAGDVGAAGSQGEKGERGAPGEQGPMGPRGPKGEPGKDEMMDYDGNISEALQEIR
TLALMGPPGLPGVAGPPGPPGQKGEIGLPGPPGHDGEKGPRGKPGEMGPPGPHGLPGRDG
PPGIKGEPGQIGAAGEKGDKGEPGQGGSPGLDGPTGEKGERGDQGMPGLPGLPGPIGLPG
LTGEKGQPGERGDKGNPGESMSGPPGPQGPPGPPGLQGLPGPKGEAGIDGMKGEKGVQGE
KGDRGPLGLPGASGLDGRPGPPGTPGPIGVSGPAGPKGERGSKGDPGVVGPMGPAGLPGL
QGLPGDKGIRGERGKKGSRGSKGDKGDQGAPGLDAPCPLGEDGLPVQGCWNK
NT seq
2319 nt
NT seq
+upstream
nt +downstream
nt
atgttggaggagaagagctggaagggtgtcagcgaagcagcttttgataggggctgcgtg
gctccccccaggaccggcgacggggagagatgctgccgcctcccgctgctgctgggctcg
gggctgcccggcatctccctgctctctctggtgctgagcctcctgctgtactttcggacc
tctgatctgcagtcccgggtgtcccacttggaagcggacagatccacgcagctccctgcc
tggctctcagcagaccaaatggagacggctattttgggaagagttgaccaactgcttgat
gagaaattgaagtttcacttgccgagacatcgagaagttcgggagacgcaccagcgatgc
aactgccctgcaggtccacctggtactacaggaagaccagggcttccgggagacaaaggc
gcgatgggaattcctgggcggccgggactaaaagggcaacctggagagaagggtgctcca
ggagaagcaggcatgtccatcattgggccccgcggtccacccggacagcctggaacaaga
ggttttcctggattcccgggtcctattggcttggatggcaaaccgggtcatcctggacag
aagggggagatgggtgctgcaggtcccaggggacagcccggacccccaggacaaaaagga
gaaaagggtcagtgtgcagagtactcccacagggagtacctaagtaccacccttgcagcc
ctgcgctctaaccagatccttacgctgaagggtgaacaaggacaagcaggaatccaaggt
cctccggggccacccggcccaccagggcccactggaccagctggacccgagggaacccca
ggacagcccgggccaattgggcctcctggcagagctggagaacctgggaagcctggcaga
gatggaaagggcttacctgggcctcctggaccaaagggagaccctgggattcaaggatac
cctggcagaaagggagagagaggcatgccagggctgccaggaagacatggcatgaagggt
gctcctgggatggccactgcaggaatgaagggtgagcctgggactccaggagaaaaggga
gagcctggagtcccagggaggatgggccccccaggtttgccagggaaaagggggcagcgg
ggtgagaagggccgagctggtgaccctgggctccctggcccaaagggagagaagggaaat
ggtgagaatgccttggtgggaggcaaaggggaacctggccctccaggtctgcctgggccc
cctggaccaaagggagaagctggtgacgttggtgctgcaggatcacagggggaaaaggga
gaacgtggtgcaccgggagagcagggacccatgggcccgaggggccccaagggagagcct
gggaaggatgaaatgatggactacgatggtaacatcagtgaagctctccaggaaatacga
accttggccttgatgggaccgccaggacttccaggtgtggctggacctccagggccacca
ggacaaaagggtgaaattggcttaccaggtcctccaggccatgacggagaaaagggacca
cgaggcaagccaggagaaatgggcccccctggacctcatggactgccaggaagggacgga
ccacctggaataaagggagagccaggccagattggggctgcaggagaaaagggagataaa
ggagagccaggacaaggaggctcaccgggtcttgatggccccactggagagaaaggagaa
cgaggtgaccaagggatgccaggactgccaggattaccaggtcccattggacttccagga
ttgacaggagagaagggtcagcctggggagcgtggagacaaaggaaatccaggagaatcg
atgtctggcccccctggacctcaaggcccaccaggacctccaggtcttcagggcctccca
ggaccgaagggggaagcagggattgatggaatgaaaggagagaagggtgtccagggtgaa
aaaggagacagagggccactgggattacccggtgcttcaggtttagacggcaggcctgga
ccaccgggtactccaggaccaattggggtttcgggaccagcgggaccaaaaggagaaaga
ggtagcaaaggagatcctggagttgtaggaccaatgggaccagcaggacttcctggttta
caaggtctgcctggtgacaaaggaatccggggggagaggggcaagaaaggctctagaggg
tctaaaggggataagggagaccaaggagcgcctggattagatgcaccctgtccgttggga
gaagatggccttccagttcaaggctgctggaataagtga
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