Nitrosococcus oceani: Noc_2582
Help
Entry
Noc_2582 CDS
T00281
Name
(GenBank) DEAD/DEAH box helicase-like protein
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
noc
Nitrosococcus oceani
Pathway
noc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
noc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Noc_2582
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
noc03019
]
Noc_2582
Enzymes [BR:
noc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Noc_2582
Messenger RNA biogenesis [BR:
noc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Noc_2582
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ABA59035
UniProt:
Q3J811
LinkDB
All DBs
Position
complement(2935489..2936784)
Genome browser
AA seq
431 aa
AA seq
DB search
MTNPDFSEISFDSLNLAEALIQGIQKAGFAICTPIQALALPLLLAGEDVAGQAQTGTGKT
ASFLLATMQCLLREPSAGAGQQPRGLIVAPTRELALQVSKDAQFLGQYTNLKCVAVHGGA
NYRKQRHLLEQGCDILIGTPGRLIDYYQQRIIGFKKIQVVVLDEADRMFDLGFIRDIRYI
LRRLPPPDKRLGMLFSATLSLRVMELAYEYMNNPQLLRIEPQKVTVDKITERVYFPANEE
KISLLLALFKRLVPRHAIVFTNTKHVAEKVWGYLEGNGFKAALLSSDVPQGKRQRLLAAF
QDRIYPILVATDVAARGLHISTVTHVFNYDLPQDPEDYVHRIGRTARAGASGLAVSFACE
DYAFSLPDIEEYIGHKVVPFSVEEEELLVPEQRVFVSHKDKKKSHRRAPHPRQKKKSFQK
KETYSGGKNHT
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
atgactaatcccgatttttctgaaatctcatttgacagcttaaatttggcggaggcattg
atacaagggattcaaaaggcgggttttgctatttgcacaccgatccaagcattggccttg
ccattgctgctagccggagaggatgtggcggggcaggctcaaacaggtaccggtaaaaca
gcttcctttctgctagcgacaatgcaatgtttattgagagagcctagcgccggagcaggc
caacagcctcgggggctgatcgtagctccaactcgtgaactagcccttcaggtaagcaaa
gatgctcaatttcttggacagtataccaacttgaaatgtgttgccgttcatggtggtgct
aattaccggaaacaacgccacctcctggagcagggttgcgatattctgattggtacgcca
gggcggcttattgattattaccaacagagaataatcggttttaaaaaaattcaggtggtg
gttttagacgaggccgatcggatgttcgatttgggctttatacgggacatccgctatatt
ttacgccgtctccccccacccgacaaacgccttggaatgctattttcggccaccctttcc
ttacgggtgatggaattggcctatgaatatatgaataatcctcagctgctgcggatcgag
ccacagaaggtaaccgtcgataaaattacggaaagggtttattttcccgctaacgaagaa
aaaatttccctactgcttgcccttttcaaacgcctagtgcctcggcatgcgattgtattt
acgaatactaaacatgttgcggaaaaggtgtggggttacctggaaggtaatggtttcaaa
gctgctctgctttctagtgatgttccccagggtaaacgccaacgtttactcgcggcattc
caagatagaatttatcctattctagtcgccacggatgttgcagcgcgaggtcttcatatc
tctacggtgacccatgtctttaattatgatttaccccaagatccagaagattacgtacat
cgcataggtcgtactgcccgggctggagctagcggtttggcagtgagctttgcttgcgag
gattacgctttttccctgcctgatatcgaggaatatattggtcataaggtcgttcctttt
tcagtagaagaagaggaactgctagtgcctgaacagcgggtatttgtgtctcataaagac
aagaaaaagtcgcataggagagcgcctcaccctcgccaaaaaaagaagtcttttcagaag
aaggagacatattcaggtggcaaaaatcatacgtag
DBGET
integrated database retrieval system
